Browse Element(s) Details


Os.27451.1.S1_at

Description gb:AK099745.1
DB_XREF= gi:32984954
TID=Os.27451.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091J21, full insert sequence.
FL= gb:AK099745.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4667011/11Glutamate receptor 3.4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46640OsAffx.15956.1.S1_at11/116+28325582..28325983hypothetical protein
LOC_Os06g46650OsAffx.15957.1.S1_at10/116+28333625..28335884hypothetical protein
LOC_Os06g46659NANA6+28338761..28339010NA
LOC_Os06g46670Os.27451.1.S1_at11/116+28344395..28350244Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os06g46680Os.49708.1.S1_at11/116+28354129..28357367cytochrome P450, putative, expressed
LOC_Os06g46690Os.24341.1.A1_at4/116+28362871..28367050Exostosin family protein, expressed
LOC_Os06g46690Os.5303.1.S2_at2/116+28362871..28367050Exostosin family protein, expressed
LOC_Os06g46700Os.5303.1.S1_at4/116+28367889..28370714expressed protein
LOC_Os06g46710NANA6+28372190..28375724retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27451.1.S1_at--822--1431Chr06:28349291..28349315 (25 bp)
AGAACCTGATGAGCCCAAAGACGAT
LOC_Os06g46670
Os.27451.1.S1_at--255--2771Chr06:28349308..28349332 (25 bp)
AAGACGATAGTGCTGGCACCGCCGA
LOC_Os06g46670
Os.27451.1.S1_at--628--8251Chr06:28349322..28349346 (25 bp)
GGCACCGCCGAGATTGCAGCTGAAG
LOC_Os06g46670
Os.27451.1.S1_at--180--1611Chr06:28349339..28349363 (25 bp)
AGCTGAAGCCGTTGCTGAAATGCAG
LOC_Os06g46670
Os.27451.1.S1_at--1159--8431Chr06:28349371..28349395 (25 bp)
GGCCAAAGCGTCTTGGTAGCTTCAA
LOC_Os06g46670
Os.27451.1.S1_at--261--7851Chr06:28349385..28349409 (25 bp)
GGTAGCTTCAAAGAACTCATGCAGT
LOC_Os06g46670
Os.27451.1.S1_at--660--5471Chr06:28349397..28349421 (25 bp)
GAACTCATGCAGTTTGTTGATAAAA
LOC_Os06g46670
Os.27451.1.S1_at--630--5571Chr06:28349615..28349639 (25 bp)
GAAATCCATTTTTTCTCAGGATTAC
LOC_Os06g46670
Os.27451.1.S1_at--327--1011Chr06:28349632..28349656 (25 bp)
AGGATTACTCGAATTATGTCTGATA
LOC_Os06g46670
Os.27451.1.S1_at--654--7511Chr06:28349808..28349832 (25 bp)
GTGGATTACTGAATTGCCTCGCTGG
LOC_Os06g46670
Os.27451.1.S1_at--292--4471Chr06:28349823..28349847 (25 bp)
GCCTCGCTGGCATTGGATATTTGTG
LOC_Os06g46670
Target Sequence 
AGAACCTGATGAGCCCAAAGACGATAGTGCTGGCACCGCCGAGATTGCAGCTGAAGCCGTTGCTGAAATGCAGCGGAGGA
GGCCAAAGCGTCTTGGTAGCTTCAAAGAACTCATGCAGTTTGTTGATAAAAAGGAAGAAGAAGTCAGGAAATCGATGAAG
CGGAGACCAAGTGAGAAAGATAATCAGGGTGTTGGTTCTTCAGATGCGCAGTCAGTGGCTTAACCGTAGAAGATTCTTTC
AGGTTCAGTCCTTCCTTCGTTCTGCACATCACAAAAATGAAAAACATACTAAAGTAGATAACAGCAGTATACTTGTAGAA
TCTAGAAATCCATTTTTTCTCAGGATTACTCGAATTATGTCTGATATATACTCTTAATATGTTCAGCAATTTTCCCATTT
TTTTCCCATTTGGGAATGCCATGAACTGTGAAAAGTGTATCTGTTTAGGTGCTTCTCTGAAGCACATGTATGACTTCTCT
TTTGCTTTATTTTTTTTATCTTTGACNCCATGAATTTGTGGATTACTGAATTGCCTCGCTGGCATTGGATATTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis