Browse Element(s) Details


Os.49708.1.S1_at

Description gb:AK064920.1
DB_XREF= gi:32974938
TID=Os.49708.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000N03, full insert sequence.
FL= gb:AK064920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4668011/11cytochrome P450, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46650OsAffx.15957.1.S1_at10/116+28333625..28335884hypothetical protein
LOC_Os06g46659NANA6+28338761..28339010NA
LOC_Os06g46670Os.27451.1.S1_at11/116+28344395..28350244Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os06g46680Os.49708.1.S1_at11/116+28354129..28357367cytochrome P450, putative, expressed
LOC_Os06g46690Os.24341.1.A1_at4/116+28362871..28367050Exostosin family protein, expressed
LOC_Os06g46690Os.5303.1.S2_at2/116+28362871..28367050Exostosin family protein, expressed
LOC_Os06g46700Os.5303.1.S1_at4/116+28367889..28370714expressed protein
LOC_Os06g46710NANA6+28372190..28375724retrotransposon protein, putative, unclassified
LOC_Os06g46720Os.51429.1.S1_at11/116+28376095..28381491retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49708.1.S1_at--1135--2491Chr06:28356937..28356961 (25 bp)
AACATGGTCCGCGAGTTCCGCTGGG
LOC_Os06g46680
Os.49708.1.S1_at--476--7211Chr06:28357015..28357039 (25 bp)
GTCGTCATGAAGAACCCGCTCCGCG
LOC_Os06g46680
Os.49708.1.S1_at--85--4531Chr06:28357099..28357123 (25 bp)
GCCGCGTCCGCCTAATTAAGTACTA
LOC_Os06g46680
Os.49708.1.S1_at--704--7231Chr06:28357104..28357128 (25 bp)
GTCCGCCTAATTAAGTACTACGATA
LOC_Os06g46680
Os.49708.1.S1_at--116--351Chr06:28357128..28357152 (25 bp)
ATAAATACTTCGGTAGCTGCTGTCC
LOC_Os06g46680
Os.49708.1.S1_at--1053--10611Chr06:28357136..28357160 (25 bp)
TTCGGTAGCTGCTGTCCGTTGGATG
LOC_Os06g46680
Os.49708.1.S1_at--313--8551Chr06:28357178..28357202 (25 bp)
TGGATGGATATGCAGATGATGTCTT
LOC_Os06g46680
Os.49708.1.S1_at--1050--6111Chr06:28357220..28357244 (25 bp)
GAGTGTTCTCTTGATATCTTCTTCT
LOC_Os06g46680
Os.49708.1.S1_at--616--10411Chr06:28357264..28357288 (25 bp)
TTATTAGTGGATCTCTTTTTTCTTT
LOC_Os06g46680
Os.49708.1.S1_at--870--7931Chr06:28357308..28357332 (25 bp)
GGATTAAGTGTACCTACTGCTGCTT
LOC_Os06g46680
Os.49708.1.S1_at--215--1991Chr06:28357323..28357347 (25 bp)
ACTGCTGCTTGATCTGCTCATATAT
LOC_Os06g46680
Target Sequence 
AACATGGTCCGCGAGTTCCGCTGGGTCCCGCCCGCCGGCGAGGGCCCCCCCGACCCCACCGAGACCTTCGCCTTCACCGT
CGTCATGAAGAACCCGCTCCGCGCCGCCCTCGTCGAGCGCCGCGTCGGCGGCGAGCTCGCCACCGGCGGCGGAGGCGGCG
CCGCCGCGTCCGCCTAATTAAGTACTACGATATAAATACTTCGGTAGCTGCTGTCCGTTGGATGGCGGATGGACGGACGG
ATGGATGGATATGCAGATGATGTCTTAAATTTTTACTTAAATAGAGTGTTCTCTTGATATCTTCTTCTTCTTTGATTTTT
TTTTGTTTTATTAGTGGATCTCTTTTTTCTTTTCTCTCTTGTTTTTATCCAGGATTAAGTGTACCTACTGCTGCTTGATC
TGCTCATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis