Browse Element(s) Details


Os.5303.1.S1_at

Description gb:AK121723.1
DB_XREF= gi:37991346
TID=Os.5303.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033081L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033081L11, full insert sequence.
FL= gb:AK121510.1 gb:AK121723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g467004/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46670Os.27451.1.S1_at11/116+28344395..28350244Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os06g46680Os.49708.1.S1_at11/116+28354129..28357367cytochrome P450, putative, expressed
LOC_Os06g46690Os.24341.1.A1_at4/116+28362871..28367050Exostosin family protein, expressed
LOC_Os06g46690Os.5303.1.S2_at2/116+28362871..28367050Exostosin family protein, expressed
LOC_Os06g46700Os.5303.1.S1_at4/116+28367889..28370714expressed protein
LOC_Os06g46710NANA6+28372190..28375724retrotransposon protein, putative, unclassified
LOC_Os06g46720Os.51429.1.S1_at11/116+28376095..28381491retrotransposon protein, putative, unclassified, expressed
LOC_Os06g46730OsAffx.28138.1.S1_at11/116+28382667..28384807hypothetical protein
LOC_Os06g46740Os.55380.1.S1_at11/116+28387377..28388576Plastocyanin-like domain containing protein, expressed
LOC_Os06g46754Os.50821.1.S1_at10/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754Os.57130.1.S1_at10/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754OsAffx.28139.1.S1_at3/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5303.1.S1_at--185--951NONE
AGGACGTCGTCCAGGCTTGCTTTGA
NONE
Os.5303.1.S1_at--581--7791Chr06:28369089..28369113 (25 bp)
GGTCCATTCAAGCTCTTTTGGCAAT
LOC_Os06g46700
Os.5303.1.S1_at--974--8211Chr06:28369070..28369094 (25 bp)
GGCAATGCATGCGTTCGAAACCTGG
LOC_Os06g46700
Os.5303.1.S1_at--835--2571Chr06:28367928..28367952 (25 bp)
AACGGAGCCGTATACTTACCTGCAG
LOC_Os06g46700
Os.5303.1.S1_at--1128--4711Chr06:28367904..28367928 (25 bp)
GCTGGATCCTCCCAAGAGAGCGGAA
LOC_Os06g46700
Os.5303.1.S1_at--384--6071Chr06:28367870..28367894 (25 bp)
GAGTAAACAGCACCTAAGTCGTCCA
NONE
Os.5303.1.S1_at--519--9691Chr06:28367810..28367834 (25 bp)
TCAAAACAACGCCTTTATCTCCTAG
NONE
Os.5303.1.S1_at--447--471Chr06:28367794..28367818 (25 bp)
ATCTCCTAGGGACCATGTTGTGCAC
NONE
Os.5303.1.S1_at--116--551Chr06:28367729..28367753 (25 bp)
ATCCTGATCCAGAGTAATGCCTTAT
NONE
Os.5303.1.S1_at--295--10691Chr06:28367682..28367706 (25 bp)
TTGCTGATGTAAGAATTCCCTCCCG
NONE
Os.5303.1.S1_at--712--10651Chr06:28367667..28367691 (25 bp)
TTCCCTCCCGATAGAATGATACCTG
NONE
Target Sequence 
AGGACGTCGTCCAGGCTTGCTTTGAGGGGAATCCTTTCAAGACAGTTCCAGGTCCATTCAAGCTCTTTTGGCAATGCATG
CGTTCGAAACCTGGGGAGGAGCCAACGGAGCCGTATACTTACCTGCAGCTGGATCCTCCCAAGAGAGCGGAAGTCAAGCT
AGAGTAAACAGCACCTAAGTCGTCCACAAGAGTGTTTAGTTTATTTCATAGTGGTTTGCCTTCAAAACAACGCCTTTATC
TCCTAGGGACCATGTTGTGCACAATGCCTTATGTTTGCATATTCAAGAATAAAAATTTGACAATCCTGATCCAGAGTAAT
GCCTTATGTTTGCATGTTTGAAATTGCTGTTGCTGATGTAAGAATTCCCTCCCGATAGAATGATACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis