Browse Element(s) Details


OsAffx.28138.1.S1_at

Description tigr:9634.m04548
TID=OsAffx.28138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4673011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46690Os.24341.1.A1_at4/116+28362871..28367050Exostosin family protein, expressed
LOC_Os06g46690Os.5303.1.S2_at2/116+28362871..28367050Exostosin family protein, expressed
LOC_Os06g46700Os.5303.1.S1_at4/116+28367889..28370714expressed protein
LOC_Os06g46710NANA6+28372190..28375724retrotransposon protein, putative, unclassified
LOC_Os06g46720Os.51429.1.S1_at11/116+28376095..28381491retrotransposon protein, putative, unclassified, expressed
LOC_Os06g46730OsAffx.28138.1.S1_at11/116+28382667..28384807hypothetical protein
LOC_Os06g46740Os.55380.1.S1_at11/116+28387377..28388576Plastocyanin-like domain containing protein, expressed
LOC_Os06g46754Os.50821.1.S1_at10/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754Os.57130.1.S1_at10/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754OsAffx.28139.1.S1_at3/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46770Os.10139.1.S1_s_at11/116+28400733..28403579polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770Os.57479.1.S1_x_at3/116+28400733..28403579polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770Os.25748.1.S1_x_at1/116+28400733..28403579polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46780OsAffx.15958.1.S1_at9/116+28405288..28406220Protease inhibitor/seed storage/LTP family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28138.1.S1_at--527--10311Chr06:28383500..28383524 (25 bp)
TTTCTGGACGAACCTGCGGCAAGTT
LOC_Os06g46730
OsAffx.28138.1.S1_at--706--191Chr06:28383435..28383459 (25 bp)
ATTTCTCGGACAATGCAACAATCTG
LOC_Os06g46730
OsAffx.28138.1.S1_at--714--3211Chr06:28383356..28383380 (25 bp)
CAAGTACTTGTTTCTTCGAGCAGCT
LOC_Os06g46730
OsAffx.28138.1.S1_at--939--5571Chr06:28383101..28383125 (25 bp)
GAAATCCGAGACCTGTGGCGTTATT
LOC_Os06g46730
OsAffx.28138.1.S1_at--680--171Chr06:28383079..28383103 (25 bp)
ATTTTCTTGAAATCTCTCTTATGGA
LOC_Os06g46730
OsAffx.28138.1.S1_at--598--7931Chr06:28383057..28383081 (25 bp)
GGATTATCGTGTAGCCATCTCACCG
LOC_Os06g46730
OsAffx.28138.1.S1_at--1018--9671Chr06:28383038..28383062 (25 bp)
TCACCGCTCGCAATGTGTTTCATAT
LOC_Os06g46730
OsAffx.28138.1.S1_at--134--791Chr06:28382936..28383050 (25 bp)
ATGTGTTTCATATCGGACCAGTTAC
LOC_Os06g46730
OsAffx.28138.1.S1_at--571--10671Chr06:28382842..28382866 (25 bp)
TTCCTTTTGTTGATGTCTGTCCTGA
LOC_Os06g46730
OsAffx.28138.1.S1_at--374--191Chr06:28382805..28382829 (25 bp)
ATTTCCTAACGTTGATGATGCCCCT
LOC_Os06g46730
OsAffx.28138.1.S1_at--103--8871Chr06:28382793..28382817 (25 bp)
TGATGATGCCCCTGACGGCAATGAT
LOC_Os06g46730
Target Sequence 
TTTCTGGACGAACCTGCGGCAAGTTTTTGATCCAGAATCGATCTCTGATACATATCAGGGTGATCATTTCTCGGACAATG
CAACAATCTGTCAAGATTCAGAGGAGAATTATGTCTTACATTTCAAAAGGATGGATGATATTTTCAAGTACTTGTTTCTT
CGAGCAGCTGATAATATTGAAGAAAAGCCATTTTCTCAAATACGAGAGGAAAAATGCAGAAATGGAGTTTTTATCCTTGA
GAAGATTAAGCTAAAGCTGAATAATGTCCCCACAGATATTTCAAGCTCTGAGTTCAATGAGGCTTGTGCTGAAATCCGAG
ACCTGTGGCGTTATTTTCTTGAAATCTCTCTTATGGATTATCGTGTAGCCATCTCACCGCTCGCAATGTGTTTCATATCG
GACCAGTTACTAACATGCATGACTGAAGATAAAGAGGCTGCCAGTAATAGTATTGATGTTGCTGCTATTAATGCAGTATT
TCCTTTTGTTGATGTCTGTCCTGATATTGATGCAATATTTCCTAACGTTGATGATGCCCCTGACGGCAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis