Browse Element(s) Details


OsAffx.15956.1.S1_at

Description tigr:9634.m04538
TID=OsAffx.15956.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4664011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46620NANA6+28308625..28309734hypothetical protein
LOC_Os06g46630NANA6+28310682..28311503retrotransposon protein, putative, unclassified
LOC_Os06g46640OsAffx.15956.1.S1_at11/116+28325582..28325983hypothetical protein
LOC_Os06g46650OsAffx.15957.1.S1_at10/116+28333625..28335884hypothetical protein
LOC_Os06g46659NANA6+28338761..28339010NA
LOC_Os06g46670Os.27451.1.S1_at11/116+28344395..28350244Glutamate receptor 3.4 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15956.1.S1_at--62--351Chr06:28325929..28325953 (25 bp)
ATACAACCTTTTCATTTTGCCAGTT
LOC_Os06g46640
OsAffx.15956.1.S1_at--484--10291Chr06:28325914..28325938 (25 bp)
TTTGCCAGTTCATTCGTTTGCCTAA
LOC_Os06g46640
OsAffx.15956.1.S1_at--1017--6671Chr06:28325899..28325923 (25 bp)
GTTTGCCTAACTGTTGGTGTAACCA
LOC_Os06g46640
OsAffx.15956.1.S1_at--302--7751Chr06:28325884..28325908 (25 bp)
GGTGTAACCAGCTCTGCATTGCATG
LOC_Os06g46640
OsAffx.15956.1.S1_at--15--31Chr06:28325857..28325881 (25 bp)
ATTGGGAGGCACTGGGACACGCTAA
LOC_Os06g46640
OsAffx.15956.1.S1_at--1019--5631Chr06:28325842..28325866 (25 bp)
GACACGCTAAGATGCAAGATCCTTG
LOC_Os06g46640
OsAffx.15956.1.S1_at--674--2791Chr06:28325827..28325851 (25 bp)
AAGATCCTTGGCATCCTCAAGTGCA
LOC_Os06g46640
OsAffx.15956.1.S1_at--564--4971Chr06:28325817..28325841 (25 bp)
GCATCCTCAAGTGCATAGTGAAGTA
LOC_Os06g46640
OsAffx.15956.1.S1_at--332--8991Chr06:28325799..28325823 (25 bp)
TGAAGTACAAGTTCTGGGACGTCGT
LOC_Os06g46640
OsAffx.15956.1.S1_at--170--8651Chr06:28325789..28325809 (21 bp)
TGGGACGTCGTCTCTGGCACTCTTT
LOC_Os06g46640
OsAffx.15956.1.S1_at--1020--4011Chr06:28325630..28325801 (25 bp)
CGTCTCTGGCACTCTTTATGTTGTT
LOC_Os06g46640
Target Sequence 
ATACAACCTTTTCATTTTGCCAGTTCATTCGTTTGCCTAACTGTTGGTGTAACCAGCTCTGCATTGCATGGGATTGGGAG
GCACTGGGACACGCTAAGATGCAAGATCCTTGGCATCCTCAAGTGCATAGTGAAGTACAAGTTCTGGGACGTCGTCTCTG
GCACTCTTTATGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis