Browse Element(s) Details


Os.33107.1.S1_at

Description gb:AK101739.1
DB_XREF= gi:32986948
TID=Os.33107.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061L02, full insert sequence.
FL= gb:AK101739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g178494/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g17810OsAffx.26937.4.S1_x_at10/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17810Os.27420.2.A1_s_at8/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17810OsAffx.26937.1.S1_x_at3/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17810Os.53303.1.S1_at1/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17820NANA5+10229111..10229803retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17830Os.54726.1.S1_at9/115+10231258..10237448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17830Os.52004.1.S1_at3/115+10231258..10237448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17830OsAffx.21264.1.S1_x_at2/115+10231258..10237448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17840Os.10731.1.A1_a_at11/115+10240730..10245535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17840Os.45173.1.S1_x_at3/115+10240730..10245535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17849Os.33107.1.S1_at4/115+10247555..10248089NA
LOC_Os05g17860NANA5+10251528..10251902retrotransposon protein, putative, unclassified
LOC_Os05g17870OsAffx.1647.1.S1_at1/115+10252827..10255517retrotransposon protein, putative, unclassified
LOC_Os05g17880NANA5+10258905..10260405hypothetical protein
LOC_Os05g17890OsAffx.940.1.S1_x_at1/115+10262422..10266618transposon protein, putative, unclassified
LOC_Os05g17890OsAffx.22896.1.S1_x_at1/115+10262422..10266618transposon protein, putative, unclassified
LOC_Os05g17890OsAffx.28610.2.S1_x_at1/115+10262422..10266618transposon protein, putative, unclassified
LOC_Os05g17900OsAffx.31869.1.S1_at6/115+10270730..10271845retrotransposon protein, putative, unclassified
LOC_Os05g17900OsAffx.31869.3.S1_x_at5/115+10270730..10271845retrotransposon protein, putative, unclassified
LOC_Os05g17900OsAffx.31869.3.S1_at3/115+10270730..10271845retrotransposon protein, putative, unclassified
LOC_Os05g17900OsAffx.31869.5.S1_x_at3/115+10270730..10271845retrotransposon protein, putative, unclassified
LOC_Os05g17900OsAffx.31869.4.S1_at2/115+10270730..10271845retrotransposon protein, putative, unclassified
LOC_Os05g17900OsAffx.31869.2.S1_at1/115+10270730..10271845retrotransposon protein, putative, unclassified
LOC_Os05g17900OsAffx.31869.4.S1_x_at1/115+10270730..10271845retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33107.1.S1_at--703--5111Chr05:10247760..10247784 (25 bp)
GCAACAAACTTATACCACTTCCTAA
LOC_Os05g17849
Os.33107.1.S1_at--50--2071Chr05:10247744..10247768 (25 bp)
ACTTCCTAATTTTGTCCAGCTGTTC
LOC_Os05g17849
Os.33107.1.S1_at--1148--4731Chr05:10247726..10247750 (25 bp)
GCTGTTCATATGTCACACTCTTTAT
LOC_Os05g17849
Os.33107.1.S1_at--446--6911Chr05:10247629..10247653 (25 bp)
GTATGACTCCATGTTAGCTTGACCA
LOC_Os05g17849
Os.33107.1.S1_at--545--2971Chr05:10247508..10247532 (25 bp)
AATGGTATGGCCATGCAGGTCCCAT
NONE
Os.33107.1.S1_at--762--10351Chr05:10246785..10246809 (25 bp)
TTTTTGCTACCAGCTAGAGGGATCT
NONE
Os.33107.1.S1_at--81--8751Chr05:10246758..10246782 (25 bp)
TGTACACCAGTTCCATCAGATACTC
NONE
Os.33107.1.S1_at--873--1011Chr05:10246051..10246075 (25 bp)
AGGTTTTCCTAGTCAATCGGCTTAT
NONE
Os.33107.1.S1_at--198--8591Chr05:10246008..10246032 (25 bp)
TGGTCAAACTGCCTATGGTGCCGTT
NONE
Os.33107.1.S1_at--385--7791Chr05:10245992..10246016 (25 bp)
GGTGCCGTTCATATGATGTTTTCTT
NONE
Os.33107.1.S1_at--585--2771Chr05:10245959..10245983 (25 bp)
AAGAGTTCCTGGTTGCCCAAGCTTG
NONE
Target Sequence 
GCAACAAACTTATACCACTTCCTAATTTTGTCCAGCTGTTCATATGTCACACTCTTTATATCTGAAGCTGTTTTTGTAAA
GGCAGTGTTCTATGATTATAGAAGTAACTATTTATTCATTTTCTGGTATATGTATGACTCCATGTTAGCTTGACCAACAA
TAAAATGGATTTACACTTATGAATATTTTCACTGTATTCTTTTTCTTGATAGGAGCGCAATCAACAATAGAACCGTGTTG
AATGTACCAGACAATGGTATGGCCATGCAGGTCCCATGAATATATTCTTTTTGCTACCAGCTAGAGGGATCTGATGTACA
CCAGTTCCATCAGATACTCACCTGCGCTGTTCAGGTTTTCCTAGTCAATCGGCTTATNNGCTATGTTATGAGGAGTGGTC
AAACTGCCTATGGTGCCGTTCATATGATGTTTTCTTCTGTTTGCAAGAGTTCCTGGTTGCCCAAGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis