Browse Element(s) Details


Os.48879.1.S1_at

Description gb:AK068648.1
DB_XREF= gi:32978665
TID=Os.48879.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48879 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159B10, full insert sequence.
FL= gb:AK068648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3150211/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31482Os.4530.1.S1_at11/119+18984507..18986195Splicing factor U2af 38 kDa subunit, putative, expressed
LOC_Os09g31486Os.25736.1.S1_at11/119+18986949..18990156Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os09g31490Os.15746.1.S1_at11/119+18993543..18997420NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31490OsAffx.15007.1.S1_at1/119+18993543..18997420NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31494NANA9+19000542..19001099hypothetical protein
LOC_Os09g31498Os.15746.1.S1_at3/119+19002002..19004014NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.48879.1.S1_x_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.48879.1.S1_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.51220.1.S1_x_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.51220.1.S1_at8/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31506Os.39298.1.S1_at9/119+19014610..19015664cinnamoyl-CoA reductase, putative, expressed
LOC_Os09g31506Os.17520.1.S1_at1/119+19014610..19015664cinnamoyl-CoA reductase, putative, expressed
LOC_Os09g31510OsAffx.28370.1.S1_x_at4/119+19016021..19017668NAD dependent epimerase/dehydratase family protein
LOC_Os09g31510OsAffx.28370.1.S1_at2/119+19016021..19017668NAD dependent epimerase/dehydratase family protein
LOC_Os09g31514Os.17520.1.S1_at11/119+19019432..19023327NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31518NANA9+19027679..19030331hypothetical protein
LOC_Os09g31522NANA9+19032498..19033092Dihydroflavonol-4-reductase, putative

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48879.1.S1_at--547--2071Chr09:19010779..19010803 (25 bp)
ACATATAACTTCCATCAATCCTTCA
LOC_Os09g31502
Os.48879.1.S1_at--108--351Chr09:19010775..19010799 (25 bp)
ATAACTTCCATCAATCCTTCAGTTC
LOC_Os09g31502
Os.48879.1.S1_at--1134--2511Chr09:19010773..19010797 (25 bp)
AACTTCCATCAATCCTTCAGTTCTG
LOC_Os09g31502
Os.48879.1.S1_at--444--10671Chr09:19010770..19010794 (25 bp)
TTCCATCAATCCTTCAGTTCTGCGG
LOC_Os09g31502
Os.48879.1.S1_at--964--9231Chr09:19010769..19010793 (25 bp)
TCCATCAATCCTTCAGTTCTGCGGT
LOC_Os09g31502
Os.48879.1.S1_at--163--3571Chr09:19010767..19010791 (25 bp)
CATCAATCCTTCAGTTCTGCGGTGA
LOC_Os09g31502
Os.48879.1.S1_at--585--371Chr09:19010766..19010790 (25 bp)
ATCAATCCTTCAGTTCTGCGGTGAC
LOC_Os09g31502
Os.48879.1.S1_at--871--9731Chr09:19010765..19010789 (25 bp)
TCAATCCTTCAGTTCTGCGGTGACA
LOC_Os09g31502
Os.48879.1.S1_at--695--3191Chr09:19010764..19010788 (25 bp)
CAATCCTTCAGTTCTGCGGTGACAG
LOC_Os09g31502
Os.48879.1.S1_at--171--2851Chr09:19010723..19010747 (25 bp)
AAGTAACGTGTTGTCGCCAATTAAG
LOC_Os09g31502
Os.48879.1.S1_at--744--7031Chr09:19010721..19010745 (25 bp)
GTAACGTGTTGTCGCCAATTAAGCT
LOC_Os09g31502
Target Sequence 
ACATATAACTTCCATCAATCCTTCAGTTCTGCGGTGACAGNANANNNNNNANNANAAAGTAACGTGTTGTCGCCAATTAA
GCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis