Browse Element(s) Details


Os.25736.1.S1_at

Description gb:AK069787.1
DB_XREF= gi:32979811
TID=Os.25736.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25736 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to heat shock protein 70 gene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030H18, full insert sequence.
FL= gb:AK069787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3148611/11Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31466Os.49006.1.S1_at11/119+18961153..18962967expressed protein
LOC_Os09g31470Os.10078.1.S1_at11/119+18963645..18967417AT hook motif family protein, expressed
LOC_Os09g31474NANA9+18975630..18976825hypothetical protein
LOC_Os09g31478Os.23143.1.S1_at11/119+18977136..18982481Auxin Efflux Carrier family protein, expressed
LOC_Os09g31482Os.4530.1.S1_at11/119+18984507..18986195Splicing factor U2af 38 kDa subunit, putative, expressed
LOC_Os09g31486Os.25736.1.S1_at11/119+18986949..18990156Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os09g31490Os.15746.1.S1_at11/119+18993543..18997420NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31490OsAffx.15007.1.S1_at1/119+18993543..18997420NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31494NANA9+19000542..19001099hypothetical protein
LOC_Os09g31498Os.15746.1.S1_at3/119+19002002..19004014NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.48879.1.S1_x_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.48879.1.S1_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.51220.1.S1_x_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.51220.1.S1_at8/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31506Os.39298.1.S1_at9/119+19014610..19015664cinnamoyl-CoA reductase, putative, expressed
LOC_Os09g31506Os.17520.1.S1_at1/119+19014610..19015664cinnamoyl-CoA reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0009532cellular_componentplastid stroma
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25736.1.S1_at--933--5371Chr09:18987474..18987498 (25 bp)
GAAGAACTCTGCAGACACCACGATC
LOC_Os09g31486
Os.25736.1.S1_at--86--5651Chr09:18987461..18987485 (25 bp)
GACACCACGATCTACAGCATTGAGA
LOC_Os09g31486
Os.25736.1.S1_at--782--2211Chr09:18987415..18987439 (25 bp)
ACAAGGTTCCTGCTGAAGTCACCAA
LOC_Os09g31486
Os.25736.1.S1_at--302--7111Chr09:18987398..18987422 (25 bp)
GTCACCAATGAGATTCAGTCTGCTG
LOC_Os09g31486
Os.25736.1.S1_at--844--3451Chr09:18987383..18987407 (25 bp)
CAGTCTGCTGTATCTGATCTAAGAG
LOC_Os09g31486
Os.25736.1.S1_at--283--8631Chr09:18987225..18987249 (25 bp)
TGGTGGTGACCAGACTCCTGAGGCT
LOC_Os09g31486
Os.25736.1.S1_at--531--6211Chr09:18987206..18987230 (25 bp)
GAGGCTGAATACCAGGATGCTGCTA
LOC_Os09g31486
Os.25736.1.S1_at--663--451Chr09:18987159..18987183 (25 bp)
ATCTACATCTAGTTTCTACCTTTTT
LOC_Os09g31486
Os.25736.1.S1_at--1097--10031Chr09:18987122..18987146 (25 bp)
TAGGAAGTTGACATCTTACCCACCC
LOC_Os09g31486
Os.25736.1.S1_at--1110--6131Chr09:18987077..18987101 (25 bp)
GAGGGTTGCTATACCTGTAGCTTTT
LOC_Os09g31486
Os.25736.1.S1_at--522--7891Chr09:18987006..18987030 (25 bp)
GGTTAATTGAGCCATCCACGAAATA
LOC_Os09g31486
Target Sequence 
GAAGAACTCTGCAGACACCACGATCTACAGCATTGAGAAGAGTGTCAGTGAGTACAAGGACAAGGTTCCTGCTGAAGTCA
CCAATGAGATTCAGTCTGCTGTATCTGATCTAAGAGCAGCAATGGCTGAGGATGATTTGGAGAAGATCAAGCAGAAGCTT
GAGGCTGCAAACAAGGCAGTTTCAAAGATTGGAGAGCACATGCAACAAGGTGGCGGTGGCGGCAGTGGCNGCGGCNGCAN
CAGCAGCAGTGGTGGTGACCAGACTCCTGAGGCTGAATACCAGGATGCTGCTAAGGAAGCTAAGATGTAGATTTGATCTA
CATCTAGTTTCTACCTTTTTTTGTTCATGTAATAGGAAGTTGACATCTTACCCACCCCTGGTTTCTTAGGTTTCTAAGAG
GGTTGCTATACCTGTAGCTTTTTTGGGCGGAGAATCGCTGATAAATTGTGAGCGGGAACAAACTCATTGGTTAATTGAGC
CATCCACGAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis