Browse Element(s) Details


Os.23143.1.S1_at

Description gb:AK073345.1
DB_XREF= gi:32983368
TID=Os.23143.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028L15, full insert sequence.
FL= gb:AK073345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3147811/11Auxin Efflux Carrier family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31454Os.55570.1.S1_x_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31454Os.55570.1.S1_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31454Os.6840.1.S1_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31458Os.17670.1.S1_at6/119+18956647..18958390expressed protein
LOC_Os09g31462NANA9+18959794..18960195hypothetical protein
LOC_Os09g31466Os.49006.1.S1_at11/119+18961153..18962967expressed protein
LOC_Os09g31470Os.10078.1.S1_at11/119+18963645..18967417AT hook motif family protein, expressed
LOC_Os09g31474NANA9+18975630..18976825hypothetical protein
LOC_Os09g31478Os.23143.1.S1_at11/119+18977136..18982481Auxin Efflux Carrier family protein, expressed
LOC_Os09g31482Os.4530.1.S1_at11/119+18984507..18986195Splicing factor U2af 38 kDa subunit, putative, expressed
LOC_Os09g31486Os.25736.1.S1_at11/119+18986949..18990156Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os09g31490Os.15746.1.S1_at11/119+18993543..18997420NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31490OsAffx.15007.1.S1_at1/119+18993543..18997420NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31494NANA9+19000542..19001099hypothetical protein
LOC_Os09g31498Os.15746.1.S1_at3/119+19002002..19004014NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23143.1.S1_at--253--8171Chr09:18977702..18977726 (25 bp)
GGCAAATCGTAATTCTTACCCCACT
LOC_Os09g31478
Os.23143.1.S1_at--408--10411Chr09:18977622..18977646 (25 bp)
TTTTGGTTCAGGGACCATCACGCAG
LOC_Os09g31478
Os.23143.1.S1_at--492--4791Chr09:18977572..18977596 (25 bp)
GCTCCGTCATCTTCGTGTGGGTGTA
LOC_Os09g31478
Os.23143.1.S1_at--122--7531Chr09:18977502..18977526 (25 bp)
GTGGACGCTGTCGTGATAGATCGAT
LOC_Os09g31478
Os.23143.1.S1_at--1005--4031Chr09:18977401..18977425 (25 bp)
CGTTCCTCCGGCGAGACAGGATGAA
LOC_Os09g31478
Os.23143.1.S1_at--149--3551Chr09:18977328..18977352 (25 bp)
CATCGCATTTGCGTCGCTGGAGAAG
LOC_Os09g31478
Os.23143.1.S1_at--1128--651Chr09:18977303..18977327 (25 bp)
ATGCAACGCGACATCTAGCTAAGGC
LOC_Os09g31478
Os.23143.1.S1_at--758--8791Chr09:18977263..18977287 (25 bp)
TGTTCGTTGTCTCATTCCGAGCAAA
LOC_Os09g31478
Os.23143.1.S1_at--1080--9891Chr09:18977220..18977244 (25 bp)
TACTATCTGTAATTCGGCGTGTGTG
LOC_Os09g31478
Os.23143.1.S1_at--837--131Chr09:18977173..18977197 (25 bp)
ATTAATCGATATTTGGGCCGGGCCG
LOC_Os09g31478
Os.23143.1.S1_at--425--6231Chr09:18977148..18977171 (24 bp)
GATGGCCCAGGATCCAGCGAGAAAA
LOC_Os09g31478
Target Sequence 
GGCAAATCGTAATTCTTACCCCACTCATCTTGAATCTTCATGTCAACTGAAGAATTAATACTGAATCTTGGTGTGTGTGT
TTTTGGTTCAGGGACCATCACGCAGCTGTTCGGCGTGGGGGAGAGCGAGTGCTCCGTCATCTTCGTGTGGGTGTACGCCC
TCGCCTCCGTCGCGGTGACGGTGTGGTCGGCGTTNTTCATGTGGACGCTGTCGTGATAGATCGATCGATCNATCGGACNC
CGCGTNCCGGCGTGAGNAGGTTTCAGGGGGTTCANANNCNACGNCGGCGAGACGTACGGTGCGTTCCTCCGGCGAGACAG
GATGAAGCGACCGGGCAAGATGACGCCGGCGAGAGGGCGGCGCGGCTGCTGCTGCATCGCATTTGCGTCGCTGGAGAAGA
TGCAACGCGACATCTAGCTAAGGCAATTCATGGCGTTCGTGTTCGTTGTCTCATTCCGAGCAAATAATGTTGTGATTTGT
ATTACTATCTGTAATTCGGCGTGTGTGTTTGCCGCCACATTTTGGCTAAATTAATCGATATTTGGGCCGGGCCGGGATGG
CCCAGGATCCAGCGAGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis