Browse Element(s) Details


Os.6840.1.S1_at

Description gb:AK064957.1
DB_XREF= gi:32974975
TID=Os.6840.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001A10, full insert sequence.
FL= gb:AK064957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3145411/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31442OsAffx.27239.2.S1_at11/119+18936373..18937979hypothetical protein
LOC_Os09g31442Os.57198.1.S1_at1/119+18936373..18937979hypothetical protein
LOC_Os09g31446Os.52093.1.S1_at11/119+18943434..18945190expressed protein
LOC_Os09g31450OsAffx.17978.1.S1_at11/119+18949084..18950277Leucine Rich Repeat family protein, expressed
LOC_Os09g31454Os.55570.1.S1_x_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31454Os.55570.1.S1_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31454Os.6840.1.S1_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31458Os.17670.1.S1_at6/119+18956647..18958390expressed protein
LOC_Os09g31462NANA9+18959794..18960195hypothetical protein
LOC_Os09g31466Os.49006.1.S1_at11/119+18961153..18962967expressed protein
LOC_Os09g31470Os.10078.1.S1_at11/119+18963645..18967417AT hook motif family protein, expressed
LOC_Os09g31474NANA9+18975630..18976825hypothetical protein
LOC_Os09g31478Os.23143.1.S1_at11/119+18977136..18982481Auxin Efflux Carrier family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6840.1.S1_at--963--2651Chr09:18953206..18953230 (25 bp)
AAGCGGAACGCCGTGGACTTCCTCA
LOC_Os09g31454
Os.6840.1.S1_at--461--8131Chr09:18953192..18953216 (25 bp)
GGACTTCCTCAAACGGCTAAACCAG
LOC_Os09g31454
Os.6840.1.S1_at--731--3271Chr09:18953183..18953207 (25 bp)
CAAACGGCTAAACCAGGGCTCGTCG
LOC_Os09g31454
Os.6840.1.S1_at--119--8231Chr09:18953020..18953044 (25 bp)
GGCAAGAGCGCCACGCCGAAGAGAA
LOC_Os09g31454
Os.6840.1.S1_at--328--3431Chr09:18952819..18952843 (25 bp)
CAGATGTGACCTGTAGCAAGTAGCA
LOC_Os09g31454
Os.6840.1.S1_at--572--3131Chr09:18952768..18952792 (25 bp)
AATTACGTAGTTTTGCGTCTGCAGC
LOC_Os09g31454
Os.6840.1.S1_at--569--2991Chr09:18952732..18952756 (25 bp)
AATGTATTGCATTCCGTAGTCGACT
LOC_Os09g31454
Os.6840.1.S1_at--1094--6931Chr09:18952717..18952741 (25 bp)
GTAGTCGACTAACTGATCGTCTGTC
LOC_Os09g31454
Os.6840.1.S1_at--482--1971Chr09:18952706..18952730 (25 bp)
ACTGATCGTCTGTCTTTGTAGCAAC
LOC_Os09g31454
Os.6840.1.S1_at--1050--10791Chr09:18952691..18952715 (25 bp)
TTGTAGCAACACCATTGATCACTTG
LOC_Os09g31454
Os.6840.1.S1_at--92--6451Chr09:18952675..18952699 (25 bp)
GATCACTTGCAAATTGCTGTTTGAA
LOC_Os09g31454
Target Sequence 
AAGCGGAACGCCGTGGACTTCCTCAAACGGCTAAACCAGGGCTCGTCGCCGTCGAAGAAGAAGAAGAAAGGCTCACCAAT
GGGGACACGGAAGCGTGCTGCGGCGGCGACGTCGCCGGAGCAGCCGCAGAAGACGCGTAAGGGGCCCGGCAGGAAGGATG
CCGGCCGCGGCGGCTCCAAGAAGGGCGGCAAGAGCGCCACGCCGAAGAGAAGCGTGGGGCGGCCACCGTCGAAGCAAGGT
GCCGCCGCCGCAACGACGCCGCCGCCGTCGAAGAGGGCCAAGGTGAACCGGTCGGAGAAGACGGCGGCGACGGCGACGGC
GGCGAAGCGGGGTGGGAAGAGGTAGAAATTTGCCAATTTGGGGGCAGTGTAGTGTAAGCTAGTAGAACAGATGTGACCTG
TAGCAAGTAGCAAAGGTGGATAGTTCAAGGTATGAGTAAATTACGTAGTTTTGCGTCTGCAGCATTTGGAGGCTAATGTA
TTGCATTCCGTAGTCGACTAACTGATCGTCTGTCTTTGTAGCAACACCATTGATCACTTGCAAATTGCTGTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis