Browse Element(s) Details


Os.52093.1.S1_at

Description gb:AK064702.1
DB_XREF= gi:32974720
TID=Os.52093.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-H01, full insert sequence.
FL= gb:AK064702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3144611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31438OsAffx.2442.1.S1_x_at1/119+18917534..18920656SBP-domain protein 5, putative, expressed
LOC_Os09g31442OsAffx.27239.2.S1_at11/119+18936373..18937979hypothetical protein
LOC_Os09g31442Os.57198.1.S1_at1/119+18936373..18937979hypothetical protein
LOC_Os09g31446Os.52093.1.S1_at11/119+18943434..18945190expressed protein
LOC_Os09g31450OsAffx.17978.1.S1_at11/119+18949084..18950277Leucine Rich Repeat family protein, expressed
LOC_Os09g31454Os.55570.1.S1_x_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31454Os.55570.1.S1_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31454Os.6840.1.S1_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31458Os.17670.1.S1_at6/119+18956647..18958390expressed protein
LOC_Os09g31462NANA9+18959794..18960195hypothetical protein
LOC_Os09g31466Os.49006.1.S1_at11/119+18961153..18962967expressed protein
LOC_Os09g31470Os.10078.1.S1_at11/119+18963645..18967417AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52093.1.S1_at--542--3951Chr09:18943744..18943768 (25 bp)
CGGAAGAACTCCACGCCGCGGAGAG
LOC_Os09g31446
Os.52093.1.S1_at--411--5591Chr09:18943679..18943703 (25 bp)
GAAATCTTTGATCGGTGATCACCAT
LOC_Os09g31446
Os.52093.1.S1_at--1122--6431Chr09:18943663..18943687 (25 bp)
GATCACCATTTGTTACATGTAGATG
LOC_Os09g31446
Os.52093.1.S1_at--111--8772Chr09:18943646..18943670 (25 bp)
TGTAGATGAAGTTGTCCATGGTGAC
LOC_Os09g31446
Os.52093.1.S1_at--362--7271Chr09:18943633..18943657 (25 bp)
GTCCATGGTGACATCTCTGCATTAG
LOC_Os09g31446
Os.52093.1.S1_at--331--7371Chr09:18943626..18943650 (25 bp)
GTGACATCTCTGCATTAGCGCACAC
LOC_Os09g31446
Os.52093.1.S1_at--432--4591Chr09:18943609..18943633 (25 bp)
GCGCACACCAACATGCTAGTACTAT
LOC_Os09g31446
Os.52093.1.S1_at--149--4591Chr09:18943559..18943583 (25 bp)
GCGAATGATAAGCTGCCTAATGGCA
LOC_Os09g31446
Os.52093.1.S1_at--1106--5051Chr09:18943512..18943536 (25 bp)
GCACCTAGTTTGTTTACTAGCGGTT
LOC_Os09g31446
Os.52093.1.S1_at--120--3971Chr09:18943492..18943516 (25 bp)
CGGTTTAGCCTAAAATTCAGTAGCT
LOC_Os09g31446
Os.52093.1.S1_at--150--10531Chr09:18943477..18943501 (25 bp)
TTCAGTAGCTTAGTCCTAGTGTTTA
LOC_Os09g31446
Target Sequence 
CGGAAGAACTCCACGCCGCGGAGAGCCGCCGAGGCCGGAGTGGGGTGCAAGTGATGGAAGTTTCTGAAATCTTTGATCGG
TGATCACCATTTGTTACATGTAGATGAAGTTGTCCATGGTGACATCTCTGCATTAGCGCACACCAACATGCTAGTACTAT
GTATGTATGGCTTGTGAGAATGTGTGCGAATGATAAGCTGCCTAATGGCAGTAGGTAGTTATATATATTATAGCACCTAG
TTTGTTTACTAGCGGTTTAGCCTAAAATTCAGTAGCTTAGTCCTAGTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis