Browse Element(s) Details


Os.4530.1.S1_at

Description gb:AK062560.1
DB_XREF= gi:32972578
TID=Os.4530.1
CNT=49
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.4530 (NCBI UniGene Cluster)
UG_TITLE=MRNA for U2 snRNP auxiliary factor, small subunit 35a
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-E06, full insert sequence.
FL= gb:AK062560.1 gb:AK099481.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3148211/11Splicing factor U2af 38 kDa subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31462NANA9+18959794..18960195hypothetical protein
LOC_Os09g31466Os.49006.1.S1_at11/119+18961153..18962967expressed protein
LOC_Os09g31470Os.10078.1.S1_at11/119+18963645..18967417AT hook motif family protein, expressed
LOC_Os09g31474NANA9+18975630..18976825hypothetical protein
LOC_Os09g31478Os.23143.1.S1_at11/119+18977136..18982481Auxin Efflux Carrier family protein, expressed
LOC_Os09g31482Os.4530.1.S1_at11/119+18984507..18986195Splicing factor U2af 38 kDa subunit, putative, expressed
LOC_Os09g31486Os.25736.1.S1_at11/119+18986949..18990156Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os09g31490Os.15746.1.S1_at11/119+18993543..18997420NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31490OsAffx.15007.1.S1_at1/119+18993543..18997420NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31494NANA9+19000542..19001099hypothetical protein
LOC_Os09g31498Os.15746.1.S1_at3/119+19002002..19004014NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.48879.1.S1_x_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.48879.1.S1_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.51220.1.S1_x_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.51220.1.S1_at8/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4530.1.S1_at--572--4411Chr09:18985569..18985593 (25 bp)
GCCACCTGCCGGCAATATGAAGAGA
LOC_Os09g31482
Os.4530.1.S1_at--863--1771Chr09:18985603..18985627 (25 bp)
ACCGTGGTGGGTACTGCAACTTCAT
LOC_Os09g31482
Os.4530.1.S1_at--434--5151Chr09:18985618..18985642 (25 bp)
GCAACTTCATGCACGTCAAGGAGAT
LOC_Os09g31482
Os.4530.1.S1_at--132--7911Chr09:18985663..18985687 (25 bp)
GGTTGTTTGGGCACCTGCATAGGTC
LOC_Os09g31482
Os.4530.1.S1_at--298--10051Chr09:18985682..18985706 (25 bp)
TAGGTCCCGGAGAAGCCATAGCCAT
LOC_Os09g31482
Os.4530.1.S1_at--583--7771Chr09:18985771..18985795 (25 bp)
GGTCCAGGGACCACGACGATTACTA
LOC_Os09g31482
Os.4530.1.S1_at--748--6411Chr09:18985987..18986011 (25 bp)
GATCTCTGGATTAGTTGCTGTTTGC
LOC_Os09g31482
Os.4530.1.S1_at--1024--10251Chr09:18986007..18986031 (25 bp)
TTTGCAATGGCCCATGTTTCTCATC
LOC_Os09g31482
Os.4530.1.S1_at--827--6831Chr09:18986022..18986046 (25 bp)
GTTTCTCATCTTGTACTGGTAGCCC
LOC_Os09g31482
Os.4530.1.S1_at--428--6411Chr09:18986079..18986103 (25 bp)
GATCTGAGCTTGGATGTACTCGAGA
LOC_Os09g31482
Os.4530.1.S1_at--1044--3751Chr09:18986097..18986121 (25 bp)
CTCGAGATTTTCCTTACTGAACTTG
LOC_Os09g31482
Target Sequence 
GCCACCTGCCGGCAATATGAAGAGAACAGCTGCAACCGTGGTGGGTACTGCAACTTCATGCACGTCAAGGAGATCGGCAG
AGACCTGAGGAAGAGGTTGTTTGGGCACCTGCATAGGTCCCGGAGAAGCCATAGCCATGGCCGGAGCCGCAGCCCGAGCC
CGTACCATTACCGGAGGGACTATGATCGGAGGAGCTCATCGCGGTCCAGGGACCACGACGATTACTACCGTGGAGGTAGC
CACGATTACTACCGTGGAGGTAGCCGGAGGAGCAGCGAGAGGCACCGCAGCAGCTACGACAGCGATGGCAGCAGGCGGCG
GCACAGGTCCAGGACTAGGAGTCCTGTCAGGGATGGTAGCGAGGAGAGGAGAGCTCAAATTGAGCAGTGGAACCGTGAAA
GGGAGGCTGCACAAGTGTGATCTCTGGATTAGTTGCTGTTTGCAATGGCCCATGTTTCTCATCTTGTACTGGTAGCCCTA
GATTAAATTAGCATCATATCTTATCTTAATGATCTGAGCTTGGATGTACTCGAGATTTTCCTTACTGAACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis