Browse Element(s) Details


OsAffx.13699.1.S1_at

Description tigr:9632.m00603
TID=OsAffx.13699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0690011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06850Os.54172.1.S1_at9/114+3596188..3600794expressed protein
LOC_Os04g06860OsAffx.16234.2.S1_x_at7/114+3604492..3605117Cationic peroxidase 2 precursor, putative
LOC_Os04g06870OsAffx.25036.1.S1_at6/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.25036.2.S1_at4/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.26548.1.S1_at3/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870Os.39298.1.S1_at1/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06879NANA4+3615929..3616475hypothetical protein
LOC_Os04g06890OsAffx.25899.1.S1_at11/114+3618375..3619295hypothetical protein
LOC_Os04g06900OsAffx.13699.1.S1_at11/114+3622315..3625192expressed protein
LOC_Os04g06910OsAffx.25900.1.S1_at11/114+3635322..3637499hypothetical protein
LOC_Os04g06920OsAffx.25901.1.S1_at11/114+3642315..3645048hypothetical protein
LOC_Os04g06930OsAffx.13700.1.S1_at11/114+3648821..3649744hypothetical protein
LOC_Os04g06940OsAffx.20369.1.S1_at5/114+3650044..3651084retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13699.1.S1_at--380--1791Chr04:3623946..3623970 (25 bp)
ACCGATCTCATCCTCTGTGGGAGAA
LOC_Os04g06900
OsAffx.13699.1.S1_at--297--7251Chr04:3624015..3624039 (25 bp)
GTCCGTTCAATCAGGGCAATGTCAA
LOC_Os04g06900
OsAffx.13699.1.S1_at--1060--751Chr04:3624033..3624057 (25 bp)
ATGTCAAATTACCTCATGTTCCTCC
LOC_Os04g06900
OsAffx.13699.1.S1_at--992--6631Chr04:3624101..3624125 (25 bp)
GTTGTACCAACGAACCTGCGATAAC
LOC_Os04g06900
OsAffx.13699.1.S1_at--170--191Chr04:3624162..3624186 (25 bp)
ATTTCTTCCGGTGGCAGGGCTTACA
LOC_Os04g06900
OsAffx.13699.1.S1_at--530--8631Chr04:3624251..3624275 (25 bp)
TGGGCTTGAGCAGACCAACGAACTT
LOC_Os04g06900
OsAffx.13699.1.S1_at--475--931Chr04:3624305..3624329 (25 bp)
AGGCAAATTCGATCCTTCAGTTCCT
LOC_Os04g06900
OsAffx.13699.1.S1_at--538--9331Chr04:3624329..3624353 (25 bp)
TCGCCTCACATATGCACATGGGATC
LOC_Os04g06900
OsAffx.13699.1.S1_at--902--10171Chr04:3625101..3625125 (25 bp)
TATACACTTCCATAGATCCTCTGAT
LOC_Os04g06900
OsAffx.13699.1.S1_at--1144--9251Chr04:3625117..3625141 (25 bp)
TCCTCTGATCAGTGTTGGTTCCAAA
LOC_Os04g06900
OsAffx.13699.1.S1_at--33--7911Chr04:3625133..3625157 (25 bp)
GGTTCCAAACAGCTATCAGTGCCAA
LOC_Os04g06900
Target Sequence 
ACCGATCTCATCCTCTGTGGGAGAAACAGGTCCAGTAACGACTCAACAAAAAAGAAAGAAGTTGAACGTGTCCGTTCAAT
CAGGGCAATGTCAAATTACCTCATGTTCCTCCTTGTGACTCGCCCTGACATGGTTCCTGGCCTTCCCCAGAACTGGTTGT
ACCAACGAACCTGCGATAACCTCGACAAAATATGCAAAGAGAATCGTGTGCAACTCATTTCTTCCGGTGGCAGGGCTTAC
AACATTGTGTTCATGGTTCTCATGAAGTTGATCCGGGGCAACAATAACAATAGCACAACATCTTATGGGCTTGAGCAGAC
CAACGAACTTGCCAAAATCCTACTTGGGATGAAGGTATCAGGCAAATTCGATCCTTCAGTTCCTCGCCTCACATATGCAC
ATGGGATCGCTAAGACAGTGTTAGGTTGGAAGTGGTTCAGTGTAAAGGTACATGGAATATACACTTCCATAGATCCTCTG
ATCAGTGTTGGTTCCAAACAGCTATCAGTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis