Browse Element(s) Details


OsAffx.25899.1.S1_at

Description tigr:9632.m00602
TID=OsAffx.25899.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0689011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06840OsAffx.25898.1.S1_at11/114+3594503..3595747hypothetical protein
LOC_Os04g06850Os.54172.1.S1_at9/114+3596188..3600794expressed protein
LOC_Os04g06860OsAffx.16234.2.S1_x_at7/114+3604492..3605117Cationic peroxidase 2 precursor, putative
LOC_Os04g06870OsAffx.25036.1.S1_at6/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.25036.2.S1_at4/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.26548.1.S1_at3/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870Os.39298.1.S1_at1/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06879NANA4+3615929..3616475hypothetical protein
LOC_Os04g06890OsAffx.25899.1.S1_at11/114+3618375..3619295hypothetical protein
LOC_Os04g06900OsAffx.13699.1.S1_at11/114+3622315..3625192expressed protein
LOC_Os04g06910OsAffx.25900.1.S1_at11/114+3635322..3637499hypothetical protein
LOC_Os04g06920OsAffx.25901.1.S1_at11/114+3642315..3645048hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25899.1.S1_at--419--5451Chr04:3618414..3618438 (25 bp)
GAACGCGTGCGCTCGATCAGGGCAA
LOC_Os04g06890
OsAffx.25899.1.S1_at--713--10831Chr04:3618463..3618487 (25 bp)
TTGTGACTCAACCTGACATGCTTCC
LOC_Os04g06890
OsAffx.25899.1.S1_at--546--8491Chr04:3618488..3618512 (25 bp)
TGGCATTCCCCAGAACTTAGAGAAC
LOC_Os04g06890
OsAffx.25899.1.S1_at--601--6471Chr04:3618546..3618570 (25 bp)
GATAACTTGGTATTCAGGCTCGTGA
LOC_Os04g06890
OsAffx.25899.1.S1_at--273--3251Chr04:3618601..3618625 (25 bp)
CAACCACTACGTTTGTTGGGCTCAA
LOC_Os04g06890
OsAffx.25899.1.S1_at--1055--2971Chr04:3618633..3618657 (25 bp)
AATGAACTCGCCAAAATCCTACTCA
LOC_Os04g06890
OsAffx.25899.1.S1_at--88--9911Chr04:3618652..3618676 (25 bp)
TACTCAAGATTGACGTTCCCAAGGA
LOC_Os04g06890
OsAffx.25899.1.S1_at--605--10531Chr04:3618686..3618710 (25 bp)
TTCAGTTCCTCGTCTCGGATATGCA
LOC_Os04g06890
OsAffx.25899.1.S1_at--638--6491Chr04:3618703..3618727 (25 bp)
GATATGCACGCAGGATCGCTGACAT
LOC_Os04g06890
OsAffx.25899.1.S1_at--384--6371Chr04:3618768..3618792 (25 bp)
GATCCAGTGGATATGCTGCTTCGCT
LOC_Os04g06890
OsAffx.25899.1.S1_at--70--2751Chr04:3618849..3618873 (25 bp)
AAGAAGCTTAGCTCCGGTGGCGAGT
LOC_Os04g06890
Target Sequence 
GAACGCGTGCGCTCGATCAGGGCAATCTCCAACTACCTCATGTTTCTCCTTGTGACTCAACCTGACATGCTTCCTGGCAT
TCCCCAGAACTTAGAGAACCGTGGGCAACTCATTTCTTCCGGCGTTAAGGTTGATAACTTGGTATTCAGGCTCGTGAAGA
AGTTACTATTGAGGAACAACAATCGCACAACCACTACGTTTGTTGGGCTCAAACAGACCAATGAACTCGCCAAAATCCTA
CTCAAGATTGACGTTCCCAAGGAATTCGACCCTTCAGTTCCTCGTCTCGGATATGCACGCAGGATCGCTGACATATGGCT
AAAGTGGAATACTGAAGAAGAATTGAATGATTTAGATCCAGTGGATATGCTGCTTCGCTTTTGGTTGAAGTTTCTCATAT
ATGCAGCCAACCGATATAACAGAGAGTGCCATGCCAAGAAGCTTAGCTCCGGTGGCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis