Browse Element(s) Details


OsAffx.25898.1.S1_at

Description tigr:9632.m00597
TID=OsAffx.25898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0684011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06800OsAffx.25896.1.S1_at10/114+3569226..3570346hypothetical protein
LOC_Os04g06810OsAffx.13697.1.S1_at11/114+3573461..3575807expressed protein
LOC_Os04g06820NANA4+3580369..3584284retrotransposon protein, putative, unclassified
LOC_Os04g06830OsAffx.25897.1.S1_at11/114+3586491..3587292hypothetical protein
LOC_Os04g06840OsAffx.25898.1.S1_at11/114+3594503..3595747hypothetical protein
LOC_Os04g06850Os.54172.1.S1_at9/114+3596188..3600794expressed protein
LOC_Os04g06860OsAffx.16234.2.S1_x_at7/114+3604492..3605117Cationic peroxidase 2 precursor, putative
LOC_Os04g06870OsAffx.25036.1.S1_at6/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.25036.2.S1_at4/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.26548.1.S1_at3/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870Os.39298.1.S1_at1/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06879NANA4+3615929..3616475hypothetical protein
LOC_Os04g06890OsAffx.25899.1.S1_at11/114+3618375..3619295hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25898.1.S1_at--573--10211Chr04:3594791..3594815 (25 bp)
TATTCCCTCGAGGACAGTAAGCTCT
LOC_Os04g06840
OsAffx.25898.1.S1_at--915--3331Chr04:3594832..3594856 (25 bp)
CACTGTCGTTGTGCAGGTCTTGGGA
LOC_Os04g06840
OsAffx.25898.1.S1_at--126--8651Chr04:3594852..3594876 (25 bp)
TGGGAGCTGCATATGTCCTCTACAA
LOC_Os04g06840
OsAffx.25898.1.S1_at--139--5311Chr04:3595009..3595033 (25 bp)
GAAGGAGCCGCATACCAAGTGCCAT
LOC_Os04g06840
OsAffx.25898.1.S1_at--960--2851Chr04:3595025..3595049 (25 bp)
AAGTGCCATTCCCACATTGAGTATA
LOC_Os04g06840
OsAffx.25898.1.S1_at--6--6091Chr04:3595043..3595067 (25 bp)
GAGTATAAGCCCCACCAGATGAGCT
LOC_Os04g06840
OsAffx.25898.1.S1_at--659--91Chr04:3595111..3595135 (25 bp)
ATTCCTGATCTGTAATGCTCACGCC
LOC_Os04g06840
OsAffx.25898.1.S1_at--129--4551Chr04:3595133..3595157 (25 bp)
GCCCTGTTCCACATTTGCAAGTATG
LOC_Os04g06840
OsAffx.25898.1.S1_at--903--611Chr04:3595155..3595179 (25 bp)
ATGCGGTTGTCGATGATTCTTCATA
LOC_Os04g06840
OsAffx.25898.1.S1_at--528--311Chr04:3595185..3595209 (25 bp)
ATACTAGGGATACCCGTGCCAGTGA
LOC_Os04g06840
OsAffx.25898.1.S1_at--341--5811Chr04:3595208..3595232 (25 bp)
GACGCCGCAATACTTCGTGGCATTA
LOC_Os04g06840
Target Sequence 
TATTCCCTCGAGGACAGTAAGCTCTGGCTCCGACACCTTCTCACTGTCGTTGTGCAGGTCTTGGGAGCTGCATATGTCCT
CTACAAACAATTCAGGGGCAGTGGAAGCCCACTCCTACTCGCCACCATTTTGATGTTTGTTGTAGGTGTTGTCAAGTATG
GGGAAAGGACATGGGCACTCATGTCCGGCAACATCGACACCATCCGGAGTACACTCAAGAAGGAGCCGCATACCAAGTGC
CATTCCCACATTGAGTATAAGCCCCACCAGATGAGCTTCAGTAATGAAGGGCACTTTAGGAGGGAGGCTAATGAAGAGGA
ATTCCTGATCTGTAATGCTCACGCCCTGTTCCACATTTGCAAGTATGCGGTTGTCGATGATTCTTCATATGACAATACTA
GGGATACCCGTGCCAGTGACGCCGCAATACTTCGTGGCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis