Browse Element(s) Details


Os.12753.1.S1_at

Description gb:AK066797.1
DB_XREF= gi:32976815
TID=Os.12753.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013079L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013079L05, full insert sequence.
FL= gb:AK066797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0679011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06760OsAffx.25894.1.S1_at11/114+3538469..3538756hypothetical protein
LOC_Os04g06760OsAffx.25894.1.S1_x_at11/114+3538469..3538756hypothetical protein
LOC_Os04g06770Os.10217.1.S1_a_at11/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06770Os.11110.1.S1_at1/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06780OsAffx.25895.1.S1_at11/114+3552567..3552887hypothetical protein
LOC_Os04g06790Os.12753.1.S1_at11/114+3562528..3568697expressed protein
LOC_Os04g06800OsAffx.25896.1.S1_at10/114+3569226..3570346hypothetical protein
LOC_Os04g06810OsAffx.13697.1.S1_at11/114+3573461..3575807expressed protein
LOC_Os04g06820NANA4+3580369..3584284retrotransposon protein, putative, unclassified
LOC_Os04g06830OsAffx.25897.1.S1_at11/114+3586491..3587292hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001887biological_processselenium metabolism
GO:0006790biological_processsulfur metabolism
GO:0018283biological_processiron incorporation into metallo-sulfur cluster
GO:0009507cellular_componentchloroplast
GO:0009000molecular_functionselenocysteine lyase activity
GO:0031071molecular_functioncysteine desulfurase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12753.1.S1_at--1096--1051Chr04:3563164..3563188 (25 bp)
AGGGACTGTTCATACTTCCGGAAGT
LOC_Os04g06790
Os.12753.1.S1_at--1130--2391Chr04:3563034..3563151 (25 bp)
AAACACCACCTGTTGTTTTGCCTGG
LOC_Os04g06790
Os.12753.1.S1_at--912--9211Chr04:3562955..3562979 (25 bp)
TCCAGAGGGCTTTGTTGTCGCGAGA
LOC_Os04g06790
Os.12753.1.S1_at--304--6771Chr04:3562898..3562922 (25 bp)
GTTAGGTTCGAAGCACGTCTGTCCA
LOC_Os04g06790
Os.12753.1.S1_at--448--6651Chr04:3562859..3562883 (25 bp)
GTTGACGATGCAGCTAGGTTCCTAG
LOC_Os04g06790
Os.12753.1.S1_at--713--6691Chr04:3562842..3562866 (25 bp)
GTTCCTAGCTAGTATCTGTGTCATG
LOC_Os04g06790
Os.12753.1.S1_at--348--1471Chr04:3562804..3562828 (25 bp)
AGCAATGCATCGTTGAGTCACTCAT
LOC_Os04g06790
Os.12753.1.S1_at--760--5151Chr04:3562777..3562801 (25 bp)
GCAACCTGCGATTTACTCTGTACAT
LOC_Os04g06790
Os.12753.1.S1_at--773--10371Chr04:3562616..3562640 (25 bp)
TTTTTTGTGTCGACTTGCAGAGCGC
LOC_Os04g06790
Os.12753.1.S1_at--592--3411Chr04:3562599..3562623 (25 bp)
CAGAGCGCCTTGTCATGCTGTATTA
LOC_Os04g06790
Os.12753.1.S1_at--169--8251Chr04:3562562..3562586 (25 bp)
GGCAGAACCTTTTCACCTATTGATG
LOC_Os04g06790
Target Sequence 
AGGGACTGTTCATACTTCCGGAAGTCTTCAGTAAGGGAAACACCACCTGTTGTTTTGCCTGGTGAAATAAATAGCGCAGA
AGTAATTTGGTTGGAGGAATTGGAGGACCATCAACCTCCAGAGGGCTTTGTTGTCGCGAGAGGTTTGTATAAAGGCCCTG
TAATAAGGAGATAGTTAGGTTCGAAGCACGTCTGTCCACGAATCACGAACCAGTTGACGATGCAGCTAGGTTCCTAGCTA
GTATCTGTGTCATGTGGGTTAGTATAGAGCAATGCATCGTTGAGTCACTCATCTGCAACCTGCGATTTACTCTGTACATG
TCAATGCAAAGTGATCTGGTGAAGATTTAACTGCCAGGTTACAAAACAAGAACGAAAAACTTTTATGGTTGACAGCCAGA
TGTTGTTCTATAACATAGTTGAGTGGCCCCCCCTATCAGCTGGAGGTTGTTACTTTTTTTTGTGTCGACTTGCAGAGCGC
CTTGTCATGCTGTATTAGGTAACCTCAACGGCAGAACCTTTTCACCTATTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis