Browse Element(s) Details


OsAffx.25894.1.S1_x_at

Description tigr:9632.m00589
TID=OsAffx.25894.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0676011/11hypothetical protein
LOC_Os04g067341/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06700OsAffx.25892.1.S1_at11/114+3517058..3519367hypothetical protein
LOC_Os04g06700Os.26930.1.S2_x_at1/114+3517058..3519367hypothetical protein
LOC_Os04g06710OsAffx.3735.1.S1_at11/114+3524700..3525035hypothetical protein
LOC_Os04g06734OsAffx.13696.1.S1_at11/114+3526847..3535106expressed protein
LOC_Os04g06734OsAffx.25894.1.S1_x_at1/114+3526847..3535106expressed protein
LOC_Os04g06760OsAffx.25894.1.S1_at11/114+3538469..3538756hypothetical protein
LOC_Os04g06760OsAffx.25894.1.S1_x_at11/114+3538469..3538756hypothetical protein
LOC_Os04g06770Os.10217.1.S1_a_at11/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06770Os.11110.1.S1_at1/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06780OsAffx.25895.1.S1_at11/114+3552567..3552887hypothetical protein
LOC_Os04g06790Os.12753.1.S1_at11/114+3562528..3568697expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25894.1.S1_x_at--1097--5031Chr04:3538539..3538563 (25 bp)
GCAGAGAGCTGATGGAGCTACCTGT
LOC_Os04g06760
OsAffx.25894.1.S1_x_at--1052--5991Chr04:3538542..3538566 (25 bp)
GAGAGCTGATGGAGCTACCTGTTCT
LOC_Os04g06760
OsAffx.25894.1.S1_x_at--732--5911Chr04:3538553..3538577 (25 bp)
GAGCTACCTGTTCTTCGGCAAAAGC
LOC_Os04g06760
OsAffx.25894.1.S1_x_at--170--1571Chr04:3538554..3538578 (25 bp)
AGCTACCTGTTCTTCGGCAAAAGCA
LOC_Os04g06760
OsAffx.25894.1.S1_x_at--612--3711Chr04:3538556..3538580 (25 bp)
CTACCTGTTCTTCGGCAAAAGCACG
LOC_Os04g06760
OsAffx.25894.1.S1_x_at--205--4251Chr04:3538559..3538583 (25 bp)
CCTGTTCTTCGGCAAAAGCACGAAG
LOC_Os04g06760
OsAffx.25894.1.S1_x_at--62--2351Chr04:3538621..3538645 (25 bp)
AAACGAAGATCAGCCAAGCTTAAGA
LOC_Os04g06760
OsAffx.25894.1.S1_x_at--769--4111Chr04:3538624..3538648 (25 bp)
CGAAGATCAGCCAAGCTTAAGAAGA
LOC_Os04g06760
OsAffx.25894.1.S1_x_at--554--2691Chr04:3538636..3538660 (25 bp)
AAGCTTAAGAAGATCTGGCAAGCTC
LOC_Os04g06760
OsAffx.25894.1.S1_x_at--1077--1451Chr04:3538643..3538667 (25 bp)
AGAAGATCTGGCAAGCTCAAGAAAG
LOC_Os04g06760
OsAffx.25894.1.S1_x_at--755--5352Chr04:3538673..3538697 (25 bp)
GAAGATCAGCAGGTCGATTTCAGAA
LOC_Os04g06760
Target Sequence 
GCAGAGAGCTGATGGAGCTACCTGTTCTTCGGCAAAAGCACGAAGAACTGACCAGGAGGTATGAGAGCCTGACTAAGAAG
CGAAACGAAGATCAGCCAAGCTTAAGAAGATCTGGCAAGCTCAAGAAAGAGAAGGAAGATCAGCAGGTCGATTTCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25894.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis