Browse Element(s) Details


Os.11110.1.S1_at

Description gb:AK066010.1
DB_XREF= gi:32976028
TID=Os.11110.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043F18, full insert sequence.
FL= gb:AK060739.1 gb:AK066010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2773011/11Cytochrome P450 family protein, expressed
LOC_Os04g067701/11Piwi domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27670OsAffx.18193.1.S1_at2/1111+15430178..15432273hypothetical protein
LOC_Os11g27670OsAffx.6678.1.S1_at1/1111+15430178..15432273hypothetical protein
LOC_Os11g27670Os.39852.1.S1_at1/1111+15430178..15432273hypothetical protein
LOC_Os11g27680NANA11+15434480..15434749hypothetical protein
LOC_Os11g27690NANA11+15435279..15435788retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27700NANA11+15436512..15438697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27710NANA11+15441480..15442528transposon protein, putative, unclassified
LOC_Os11g27720NANA11+15447514..15447801retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27730Os.11110.1.S1_at11/1111+15454820..15458668Cytochrome P450 family protein, expressed
LOC_Os11g27730Os.16025.1.S1_s_at1/1111+15454820..15458668Cytochrome P450 family protein, expressed
LOC_Os11g27740NANA11+15464713..15468729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27750NANA11+15474692..15476300retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27760OsAffx.22699.1.S1_x_at1/1111+15478271..15484705retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006342biological_processchromatin silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0040034biological_processregulation of development, heterochronic
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11110.1.S1_at--667--2871Chr11:15455394..15455418 (25 bp)
AAGTGTGAATGGTTCTGCCACTGCG
LOC_Os11g27730
Os.11110.1.S1_at--189--1991Chr11:15455375..15455399 (25 bp)
ACTGCGTCAGTCAACTTTTGGGTGA
LOC_Os11g27730
Os.11110.1.S1_at--961--772Chr11:15455312..15455336 (25 bp)
ATGTGCCTCGGGATGAACTTTGCCA
LOC_Os11g27730
Os.11110.1.S1_at--492--10691Chr11:15455293..15455317 (25 bp)
TTGCCATGGCAGTTATCGAGATCAC
LOC_Os11g27730
Os.11110.1.S1_at--704--2171Chr11:15455270..15455294 (25 bp)
ACACTAGCGAACCTTCTCTGGAAAT
LOC_Os11g27730
Os.11110.1.S1_at--697--8151Chr11:15455251..15455275 (25 bp)
GGAAATTTGATTGGGCGCTGCCTGC
LOC_Os11g27730
Os.11110.1.S1_at--825--9971Chr11:15455138..15455162 (25 bp)
TAGCTGCTAGCAAGTACTCGAAGGA
LOC_Os11g27730
Os.11110.1.S1_at--847--10171Chr11:15455030..15455054 (25 bp)
TATACACCGTTTCTCTATGCTTCAA
LOC_Os11g27730
Os.11110.1.S1_at--769--631Chr11:15455014..15455038 (25 bp)
ATGCTTCAACCCTTGGAGGATCCAA
LOC_Os11g27730
Os.11110.1.S1_at--1082--7912Chr11:15454945..15454969 (25 bp)
GGTTGTCGATGCTTAATCTGTTTGT
LOC_Os11g27730
Os.11110.1.S1_at--956--7871Chr11:15454882..15454906 (25 bp)
GGTTAACTGCCTAGCCATTTGTAAT
LOC_Os11g27730
Target Sequence 
AAGTGTGAATGGTTCTGCCACTGCGTCAGTCAACTTTTGGGTGAATAACTATCAATACTTGCCATTTGGTTCTGGAAGGA
GAATGTGCCTCGGGATGAACTTTGCCATGGCAGTTATCGAGATCACACTAGCGAACCTTCTCTGGAAATTTGATTGGGCG
CTGCCTGCACATGCAATGGAGGTTGATATGTCAGAAGAGTTTGGGTTGTCGGTGCGTCTGAAAGAAAAGCTATTGTTGGT
TCCAAAGCAACATGTGTAGCTGCTAGCAAGTACTCGAAGGAATTGAATTGTCCAACTTTAATGTGAGAAAGTCTACCATG
ACCTATGGGGGTCTACACTAATGTTAACCTCTGGACAAAGTCATTATACACCGTTTCTCTATGCTTCAACCCTTGGAGGA
TCCAATTCTTATCACAAAATATGTGTGTAACAAGTAATAATTTTTGCATGGTTGTCGATGCTTAATCTGTTTGTTTGTTT
ACTTTGTGTATGCAGTGGTGTATGATCAGTTTGGTTAACTGCCTAGCCATTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis