Browse Element(s) Details


OsAffx.25895.1.S1_at

Description tigr:9632.m00591
TID=OsAffx.25895.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0678011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06734OsAffx.13696.1.S1_at11/114+3526847..3535106expressed protein
LOC_Os04g06734OsAffx.25894.1.S1_x_at1/114+3526847..3535106expressed protein
LOC_Os04g06760OsAffx.25894.1.S1_at11/114+3538469..3538756hypothetical protein
LOC_Os04g06760OsAffx.25894.1.S1_x_at11/114+3538469..3538756hypothetical protein
LOC_Os04g06770Os.10217.1.S1_a_at11/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06770Os.11110.1.S1_at1/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06780OsAffx.25895.1.S1_at11/114+3552567..3552887hypothetical protein
LOC_Os04g06790Os.12753.1.S1_at11/114+3562528..3568697expressed protein
LOC_Os04g06800OsAffx.25896.1.S1_at10/114+3569226..3570346hypothetical protein
LOC_Os04g06810OsAffx.13697.1.S1_at11/114+3573461..3575807expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25895.1.S1_at--413--5791Chr04:3552749..3552773 (25 bp)
GACGACTGCCAGATGCGTGCGAGCA
LOC_Os04g06780
OsAffx.25895.1.S1_at--1019--1971Chr04:3552745..3552769 (25 bp)
ACTGCCAGATGCGTGCGAGCAAACG
LOC_Os04g06780
OsAffx.25895.1.S1_at--212--1931Chr04:3552680..3552704 (25 bp)
ACGGAGTGGCATGGAATGAAGCAAT
LOC_Os04g06780
OsAffx.25895.1.S1_at--206--851Chr04:3552670..3552694 (25 bp)
ATGGAATGAAGCAATTCGCATCCTC
LOC_Os04g06780
OsAffx.25895.1.S1_at--1078--4111Chr04:3552654..3552678 (25 bp)
CGCATCCTCGGTGGCATATTCTGAA
LOC_Os04g06780
OsAffx.25895.1.S1_at--1070--10031Chr04:3552627..3552651 (25 bp)
TAGTGCGAATTGGATGGCAAACCCT
LOC_Os04g06780
OsAffx.25895.1.S1_at--625--9131Chr04:3552624..3552648 (25 bp)
TGCGAATTGGATGGCAAACCCTGAA
LOC_Os04g06780
OsAffx.25895.1.S1_at--698--7991Chr04:3552616..3552640 (25 bp)
GGATGGCAAACCCTGAAAGCAATGC
LOC_Os04g06780
OsAffx.25895.1.S1_at--901--8231Chr04:3552612..3552636 (25 bp)
GGCAAACCCTGAAAGCAATGCGTAT
LOC_Os04g06780
OsAffx.25895.1.S1_at--1113--5551Chr04:3552602..3552626 (25 bp)
GAAAGCAATGCGTATTCGGTGGCAT
LOC_Os04g06780
OsAffx.25895.1.S1_at--714--5193Chr08:17655600..17655620 (21 bp)
GCAATGCGTATTCGGTGGCATATTC
NONE
Target Sequence 
GACGACTGCCAGATGCGTGCGAGCAAACGGAGCGAGGGGGATGAACTGACGACGCGCGGCTTCGGGGAGACGGAGTGGCA
TGGAATGAAGCAATTCGCATCCTCGGTGGCATATTCTGAAAGTAGTGCGAATTGGATGGCAAACCCTGAAAGCAATGCGT
ATTCGGTGGCATATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis