Browse Element(s) Details


OsAffx.13693.1.S1_at

Description tigr:9632.m00567
TID=OsAffx.13693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0654011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06520Os.6075.1.S1_at11/114+3397874..3399582expressed protein
LOC_Os04g06520Os.6075.1.S2_at11/114+3397874..3399582expressed protein
LOC_Os04g06510OsAffx.25891.2.S1_at10/114+3404604..3406890hypothetical protein
LOC_Os04g06510Os.26930.1.S2_x_at1/114+3404604..3406890hypothetical protein
LOC_Os04g06500OsAffx.25892.1.S1_at11/114+3411608..3414314hypothetical protein
LOC_Os04g06500Os.26930.1.S2_x_at1/114+3411608..3414314hypothetical protein
LOC_Os04g06540OsAffx.13693.1.S1_at11/114+3424260..3425632hypothetical protein
LOC_Os04g06550NANA4+3432441..3435185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06560Os.40360.1.S1_at8/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.2.S1_x_at7/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40360.1.S1_x_at7/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.4.S1_x_at4/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.4.S1_at1/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.5.S1_x_at1/114+3438150..3440023hypothetical protein
LOC_Os04g06580NANA4+3450136..3450606retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13693.1.S1_at--155--3011Chr04:3424643..3424667 (25 bp)
AATGACTACATTGAGACCCGTGAGG
LOC_Os04g06540
OsAffx.13693.1.S1_at--558--4711Chr04:3424939..3424963 (25 bp)
GCTGGCACAGTTAGCTGCTCTAGTC
LOC_Os04g06540
OsAffx.13693.1.S1_at--2--4831Chr04:3424955..3424979 (25 bp)
GCTCTAGTCGCTACAAATGAGTCTA
LOC_Os04g06540
OsAffx.13693.1.S1_at--608--3232Chr10:4988183..4988202 (20 bp)
CAACCCGAACCTTCCTTAGAGTATG
NONE
OsAffx.13693.1.S1_at--907--6751Chr04:3425018..3425042 (25 bp)
GTTAAGGCGATCACCATGAGCCGGG
LOC_Os04g06540
OsAffx.13693.1.S1_at--337--7611Chr04:3425041..3425065 (25 bp)
GGGAAAGTCTACTCGGGATCCGCCA
LOC_Os04g06540
OsAffx.13693.1.S1_at--469--7051Chr04:3425094..3425118 (25 bp)
GTAACAAGGAGGCATCACCTGCTAG
LOC_Os04g06540
OsAffx.13693.1.S1_at--112--3871Chr04:3425124..3425148 (25 bp)
CTGATACCGACAAAGCAGCTCAACC
LOC_Os04g06540
OsAffx.13693.1.S1_at--962--1171Chr04:3425169..3425193 (25 bp)
AGTACTGCGACACATCGGCTGCTTC
LOC_Os04g06540
OsAffx.13693.1.S1_at--347--3251Chr04:3425490..3425514 (25 bp)
CAAGCGTCAGTGTAATGCCCAAAGA
LOC_Os04g06540
OsAffx.13693.1.S1_at--1001--2971Chr04:3425557..3425581 (25 bp)
AATGTGTCTCCAACTGGCCGACTCG
LOC_Os04g06540
Target Sequence 
AATGACTACATTGAGACCCGTGAGGAGGAAATGTTCATGGGGAACAACAACAGGTTTCGTCCACAAGGAGGCCATGGGTG
GAGCCAGCCCCGCCCATACTTCCAAGGAGGCAACAATAATAACGCTAAGCTTCAACAAGATGATAGAGATACAGCTGGCA
CAGTTAGCTGCTCTAGTCGCTACAAATGAGTCTAGGAGGATTCTAGGACAACCCGAACCTTCCTTAGAGTATGTTAAGGC
GATCACCATGAGCCGGGGAAAGTCTACTCGGGATCCGCCATATCCTAACCCTGCAGGAACACAGAGCAGTAACAAGGAGG
CATCACCTGCTAGTCCGGCTGATACCGACAAAGCAGCTCAACCAAGTAAAATAGTGCCGCAAGAGTACTGCGACACATCG
GCTGCTTCCGTTTCCCCAAAGATACAAGAAACCGCCCTCTGCGACCTTGGAGCAAGCGTCAGTGTAATGCCCAAAGAGGT
CTTTGACAAGTTCAACTTCACGGTGTTGGCACCAACACCAATGTGTCTCCAACTGGCCGACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis