Browse Element(s) Details


OsAffx.25876.1.S1_at

Description tigr:9632.m00533
TID=OsAffx.25876.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0556011/11Protein kinase domain containing protein
LOC_Os04g0621011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g05510NANA4+2772337..2772777transposon protein, putative, unclassified
LOC_Os04g05520NANA4+2774541..2780696transposon protein, putative, unclassified
LOC_Os04g05530NANA4+2781332..2784567transposon protein, putative, unclassified
LOC_Os04g05540OsAffx.7633.1.S1_at1/114+2786787..2788482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g05550OsAffx.3727.1.S1_at11/114+2789616..2790100hypothetical protein
LOC_Os04g05550OsAffx.25888.2.S1_x_at1/114+2789616..2790100hypothetical protein
LOC_Os04g05560OsAffx.25876.1.S1_at11/114+2796189..2798730Protein kinase domain containing protein
LOC_Os04g05570OsAffx.32023.1.S1_at11/114+2805543..2809038transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05580Os.54167.1.S1_at11/114+2813295..2817621Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25876.1.S1_at--35--2892Chr04:3210079..3210103 (25 bp)
AAGGGCATTATCAGCGCTCTTGTTT
LOC_Os04g06210
OsAffx.25876.1.S1_at--992--4932Chr04:3210083..3210107 (25 bp)
GCATTATCAGCGCTCTTGTTTACCT
LOC_Os04g06210
OsAffx.25876.1.S1_at--931--10412Chr04:3210086..3210110 (25 bp)
TTATCAGCGCTCTTGTTTACCTTCA
LOC_Os04g06210
OsAffx.25876.1.S1_at--1133--4812Chr04:3210094..3210118 (25 bp)
GCTCTTGTTTACCTTCACCATGATA
LOC_Os04g06210
OsAffx.25876.1.S1_at--273--2992Chr04:3210181..3210205 (25 bp)
AATGCTAGATTAGCAGATTTCGGGC
LOC_Os04g06210
OsAffx.25876.1.S1_at--824--9972Chr04:3210369..3210393 (25 bp)
TAGCTATGCACAAGTCTGGGAAAGG
LOC_Os04g06210
OsAffx.25876.1.S1_at--667--3292Chr04:3210377..3210401 (25 bp)
CACAAGTCTGGGAAAGGTACATCGA
LOC_Os04g06210
OsAffx.25876.1.S1_at--781--2532Chr04:3210405..3210429 (25 bp)
AACTCTGATGCAGGCTGCTGACGAT
LOC_Os04g06210
OsAffx.25876.1.S1_at--695--9052Chr04:3210413..3210437 (25 bp)
TGCAGGCTGCTGACGATAGGTTACA
LOC_Os04g06210
OsAffx.25876.1.S1_at--941--772Chr04:3210554..3210578 (25 bp)
ATGGGCCGTTGCCTAAACTGGCCAA
LOC_Os04g06210
OsAffx.25876.1.S1_at--1093--8612Chr04:3210555..3210579 (25 bp)
TGGGCCGTTGCCTAAACTGGCCAAA
LOC_Os04g06210
Target Sequence 
AAGGGCATTATCAGCGCTCTTGTTTACCTTCACCATGATAGNNATCCATACATNCTTCACAGGGATATCAAACCGAGCAA
CATACTCNTGGACAANAATTTCAATGCTAGATTAGCAGATTTCGGGCTGTCNAGAACTGCNGACAATGGAACAATACAAT
CGTCNATGGTTGTAGGAANNGAAAATTACTTGGATCCAGAGTGCAGGAAGACGGGAAAGTTCAACNGTAGCTCNGATGTC
TNCAGCTTCGGGCTCGTTCTGCTAGAGATTGCTTGCAAGAAAGANNANAATAGCTATGCACAAGTCTGGGAAAGGTACAT
CGACANAACTCTGATGCAGGCTGCTGACGATAGGTTACANGGTGCGTTCGANNAGANGCAGATGGAGCGTGTGATCNTCT
TGGGGCTGTGGTGTTGTCAGCCNAATATTGAGATGCGACCTANGATGGAGNAAGCAATGGATTTCCTGGAGAGTGATGGG
CCGTTGCCTAAACTGGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis