Browse Element(s) Details


OsAffx.12179.1.S1_at

Description tigr:9630.m02327
TID=OsAffx.12179.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2491011/11hypothetical protein
LOC_Os10g101402/11hypothetical protein
LOC_Os12g084202/11transposon protein, putative, unclassified
LOC_Os11g169302/11transposon protein, putative, unclassified
LOC_Os05g282502/11Zinc knuckle family protein
LOC_Os12g171002/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g051202/11retrotransposon, putative, centromere-specific
LOC_Os07g165002/11Transposable element protein, putative, Retrotrans_gag
LOC_Os05g159501/11retrotransposon protein, putative, unclassified
LOC_Os12g194501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24860NANA2+14401378..14408508retrotransposon protein, putative, unclassified
LOC_Os02g24870NANA2+14412750..14413948retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24880NANA2+14419839..14422070Zinc knuckle family protein
LOC_Os02g24890OsAffx.11525.1.S1_at3/112+14425304..14429616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24890OsAffx.31892.5.S1_x_at2/112+14425304..14429616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24890OsAffx.31892.1.S1_x_at2/112+14425304..14429616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24900NANA2+14430684..14431332retrotransposon protein, putative, unclassified
LOC_Os02g24910OsAffx.12179.1.S1_at11/112+14433376..14434182hypothetical protein
LOC_Os02g24910OsAffx.12179.1.S1_x_at11/112+14433376..14434182hypothetical protein
LOC_Os02g24920OsAffx.12180.1.S1_at11/112+14438064..14438342hypothetical protein
LOC_Os02g24930OsAffx.12181.1.S1_at11/112+14447098..14448113hypothetical protein
LOC_Os02g24940OsAffx.2735.1.S1_at11/112+14454786..14457518hypothetical protein
LOC_Os02g24950NANA2+14457745..14461411transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12179.1.S1_at--845--105147Chr12:8508233..8508645 (25 bp)
AGGGCATCGGATAGAAGAAATACCA
NONE
OsAffx.12179.1.S1_at--1010--497117Chr12:8508236..8508648 (25 bp)
GCATCGGATAGAAGAAATACCAACA
NONE
OsAffx.12179.1.S1_at--629--5371Chr02:14433833..14433856 (24 bp)
GAAGAAATACCAACATTCACCAAGG
LOC_Os02g24910
OsAffx.12179.1.S1_at--683--1411Chr02:14433834..14433858 (25 bp)
AGAAATACCAACATTCACCAAGGCA
LOC_Os02g24910
OsAffx.12179.1.S1_at--700--5591Chr02:14433835..14433859 (25 bp)
GAAATACCAACATTCACCAAGGCAG
LOC_Os02g24910
OsAffx.12179.1.S1_at--868--2251Chr02:14433836..14433860 (25 bp)
AAATACCAACATTCACCAAGGCAGG
LOC_Os02g24910
OsAffx.12179.1.S1_at--131--3091Chr02:14433837..14433861 (25 bp)
AATACCAACATTCACCAAGGCAGGG
LOC_Os02g24910
OsAffx.12179.1.S1_at--577--7591Chr02:14434007..14434031 (25 bp)
GGGCAGCAGAATCTCGTATCCCTCC
LOC_Os02g24910
OsAffx.12179.1.S1_at--501--8251Chr02:14434008..14434032 (25 bp)
GGCAGCAGAATCTCGTATCCCTCCA
LOC_Os02g24910
OsAffx.12179.1.S1_at--1145--1451Chr02:14434014..14434038 (25 bp)
AGAATCTCGTATCCCTCCACCTATG
LOC_Os02g24910
OsAffx.12179.1.S1_at--986--1411Chr02:14434095..14434119 (25 bp)
AGAACAAGAAATGAAGTCGCCGGAG
LOC_Os02g24910
Target Sequence 
AGGGCATCGGATAGAAGAAATACCAACATTCACCAAGGCAGGGGATGAGGTGCTCCACAAGTATGTCACACCCACCGCTA
CTCCATCCACTCCAAAGGAGGAGCGGTTTTGCATTATGGGAGTGCGAACTCCCAGCGGTGGGTATGGCAAGGGTTTGCTC
CGGCCTTTGACAGCAACGGAGAAGGAGGGGGCAGCAGAATCTCGTATCCCTCCACCTATGAAGGTGAAGCGTCACTTGAC
GCCCCCTCCAATTGTAAGGGCGGCCGACCAATTTCAAGAACAAGAAATGAAGTCGCCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis