Browse Element(s) Details


OsAffx.12179.1.S1_x_at

Description tigr:9630.m02327
TID=OsAffx.12179.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2491011/11hypothetical protein
LOC_Os12g084201/11transposon protein, putative, unclassified
LOC_Os11g169301/11transposon protein, putative, unclassified
LOC_Os12g194501/11hypothetical protein
LOC_Os07g165001/11Transposable element protein, putative, Retrotrans_gag
LOC_Os05g282501/11Zinc knuckle family protein
LOC_Os11g231301/11retrotransposon protein, putative, unclassified
LOC_Os05g159501/11retrotransposon protein, putative, unclassified
LOC_Os10g101401/11hypothetical protein
LOC_Os12g171001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g051201/11retrotransposon, putative, centromere-specific
LOC_Os11g228801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24860NANA2+14401378..14408508retrotransposon protein, putative, unclassified
LOC_Os02g24870NANA2+14412750..14413948retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24880NANA2+14419839..14422070Zinc knuckle family protein
LOC_Os02g24890OsAffx.11525.1.S1_at3/112+14425304..14429616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24890OsAffx.31892.5.S1_x_at2/112+14425304..14429616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24890OsAffx.31892.1.S1_x_at2/112+14425304..14429616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24900NANA2+14430684..14431332retrotransposon protein, putative, unclassified
LOC_Os02g24910OsAffx.12179.1.S1_at11/112+14433376..14434182hypothetical protein
LOC_Os02g24910OsAffx.12179.1.S1_x_at11/112+14433376..14434182hypothetical protein
LOC_Os02g24920OsAffx.12180.1.S1_at11/112+14438064..14438342hypothetical protein
LOC_Os02g24930OsAffx.12181.1.S1_at11/112+14447098..14448113hypothetical protein
LOC_Os02g24940OsAffx.2735.1.S1_at11/112+14454786..14457518hypothetical protein
LOC_Os02g24950NANA2+14457745..14461411transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12179.1.S1_x_at--1011--497117Chr12:8508236..8508648 (25 bp)
GCATCGGATAGAAGAAATACCAACA
NONE
OsAffx.12179.1.S1_x_at--628--5371Chr02:14433833..14433856 (24 bp)
GAAGAAATACCAACATTCACCAAGG
LOC_Os02g24910
OsAffx.12179.1.S1_x_at--869--2251Chr02:14433836..14433860 (25 bp)
AAATACCAACATTCACCAAGGCAGG
LOC_Os02g24910
OsAffx.12179.1.S1_x_at--130--3091Chr02:14433837..14433861 (25 bp)
AATACCAACATTCACCAAGGCAGGG
LOC_Os02g24910
OsAffx.12179.1.S1_x_at--857--3533Chr11:12831137..12831161 (25 bp)
CATCCACTCCAAAGGAGGAGCGGTT
LOC_Os11g23130
OsAffx.12179.1.S1_x_at--319--2311Chr02:14433912..14433936 (25 bp)
AAAGGAGGAGCGGTTTTGCATTATG
LOC_Os02g24910
OsAffx.12179.1.S1_x_at--62--4791Chr02:14433975..14433999 (25 bp)
GCTCCGGCCTTTGACAGCAACGGAG
LOC_Os02g24910
OsAffx.12179.1.S1_x_at--578--7591Chr02:14434007..14434031 (25 bp)
GGGCAGCAGAATCTCGTATCCCTCC
LOC_Os02g24910
OsAffx.12179.1.S1_x_at--500--8251Chr02:14434008..14434032 (25 bp)
GGCAGCAGAATCTCGTATCCCTCCA
LOC_Os02g24910
OsAffx.12179.1.S1_x_at--1146--1451Chr02:14434014..14434038 (25 bp)
AGAATCTCGTATCCCTCCACCTATG
LOC_Os02g24910
OsAffx.12179.1.S1_x_at--987--1411Chr02:14434095..14434119 (25 bp)
AGAACAAGAAATGAAGTCGCCGGAG
LOC_Os02g24910
Target Sequence 
GCATCGGATAGAAGAAATACCAACATTCACCAAGGCAGGGGATGAGGTGCTCCACAAGTATGTCACACCCACCGCTACTC
CATCCACTCCAAAGGAGGAGCGGTTTTGCATTATGGGAGTGCGAACTCCCAGCGGTGGGTATGGCAAGGGTTTGCTCCGG
CCTTTGACAGCAACGGAGAAGGAGGGGGCAGCAGAATCTCGTATCCCTCCACCTATGAAGGTGAAGCGTCACTTGACGCC
CCCTCCAATTGTAAGGGCGGCCGACCAATTTCAAGAACAAGAAATGAAGTCGCCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12179.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis