Browse Element(s) Details


OsAffx.12180.1.S1_at

Description tigr:9630.m02328
TID=OsAffx.12180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2492011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24870NANA2+14412750..14413948retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24880NANA2+14419839..14422070Zinc knuckle family protein
LOC_Os02g24890OsAffx.11525.1.S1_at3/112+14425304..14429616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24890OsAffx.31892.5.S1_x_at2/112+14425304..14429616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24890OsAffx.31892.1.S1_x_at2/112+14425304..14429616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24900NANA2+14430684..14431332retrotransposon protein, putative, unclassified
LOC_Os02g24910OsAffx.12179.1.S1_at11/112+14433376..14434182hypothetical protein
LOC_Os02g24910OsAffx.12179.1.S1_x_at11/112+14433376..14434182hypothetical protein
LOC_Os02g24920OsAffx.12180.1.S1_at11/112+14438064..14438342hypothetical protein
LOC_Os02g24930OsAffx.12181.1.S1_at11/112+14447098..14448113hypothetical protein
LOC_Os02g24940OsAffx.2735.1.S1_at11/112+14454786..14457518hypothetical protein
LOC_Os02g24950NANA2+14457745..14461411transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12180.1.S1_at--1105--9511Chr02:14438110..14438134 (25 bp)
TCTCTCTATCTCTCGTAAATCACCA
LOC_Os02g24920
OsAffx.12180.1.S1_at--892--3751Chr02:14438113..14438137 (25 bp)
CTCTATCTCTCGTAAATCACCAAGT
LOC_Os02g24920
OsAffx.12180.1.S1_at--461--451Chr02:14438117..14438141 (25 bp)
ATCTCTCGTAAATCACCAAGTCAGA
LOC_Os02g24920
OsAffx.12180.1.S1_at--1146--7031Chr02:14438124..14438148 (25 bp)
GTAAATCACCAAGTCAGAGCTCCGA
LOC_Os02g24920
OsAffx.12180.1.S1_at--557--3071Chr02:14438127..14438151 (25 bp)
AATCACCAAGTCAGAGCTCCGATTC
LOC_Os02g24920
OsAffx.12180.1.S1_at--1084--9651Chr02:14438129..14438153 (25 bp)
TCACCAAGTCAGAGCTCCGATTCCG
LOC_Os02g24920
OsAffx.12180.1.S1_at--1104--3211Chr02:14438133..14438157 (25 bp)
CAAGTCAGAGCTCCGATTCCGCTCT
LOC_Os02g24920
OsAffx.12180.1.S1_at--338--1371Chr02:14438139..14438163 (25 bp)
AGAGCTCCGATTCCGCTCTCCGGAG
LOC_Os02g24920
OsAffx.12180.1.S1_at--58--4051Chr02:14438146..14438170 (25 bp)
CGATTCCGCTCTCCGGAGATCCAGG
LOC_Os02g24920
OsAffx.12180.1.S1_at--965--9293Chr02:14438150..14438174 (25 bp)
TCCGCTCTCCGGAGATCCAGGACGA
LOC_Os02g24920
OsAffx.12180.1.S1_at--575--9173Chr07:8366642..8366738 (25 bp)
TGCCTCCGGAACTGCTTCCTCTGCA
NONE
Target Sequence 
TCTCTCTATCTCTCGTAAATCACCAAGTCAGAGCTCCGATTCCGCTCTCCGGAGATCCAGGACGAGCAGGTGCCTCCGGA
ACTGCTTCCTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis