Browse Element(s) Details


OsAffx.12187.1.S1_at

Description tigr:9630.m02361
TID=OsAffx.12187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2524011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25210OsAffx.19946.1.S1_at11/112+14655721..14656800hypothetical protein
LOC_Os02g25220OsAffx.12186.1.S1_at11/112+14659161..14662082hypothetical protein
LOC_Os02g25230Os.50613.1.S1_at11/112+14675186..14678936calcium channel isoform, putative, expressed
LOC_Os02g25240OsAffx.12187.1.S1_at11/112+14679575..14679787hypothetical protein
LOC_Os02g25250OsAffx.31827.2.S1_at11/112+14695953..14698849hypothetical protein
LOC_Os02g25260OsAffx.20615.1.S1_at1/112+14699676..14706157retrotransposon protein, putative, unclassified
LOC_Os02g25260OsAffx.29160.1.S1_at1/112+14699676..14706157retrotransposon protein, putative, unclassified
LOC_Os02g25260OsAffx.22699.1.S1_x_at1/112+14699676..14706157retrotransposon protein, putative, unclassified
LOC_Os02g25260OsAffx.16111.1.S1_at1/112+14699676..14706157retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12187.1.S1_at--36--9971Chr02:14679736..14679760 (25 bp)
TACCGTGTCTGCACCTTCAACTCCG
LOC_Os02g25240
OsAffx.12187.1.S1_at--1127--8391Chr02:14679699..14679723 (25 bp)
TCTCCGGACCGGAGCCTTTCCGATA
LOC_Os02g25240
OsAffx.12187.1.S1_at--838--8011Chr02:14679689..14679713 (25 bp)
GGAGCCTTTCCGATACCGTCGAGAT
LOC_Os02g25240
OsAffx.12187.1.S1_at--1128--4431Chr02:14679686..14679710 (25 bp)
GCCTTTCCGATACCGTCGAGATGAA
LOC_Os02g25240
OsAffx.12187.1.S1_at--292--4031Chr02:14679679..14679703 (25 bp)
CGATACCGTCGAGATGAAGCCATGC
LOC_Os02g25240
OsAffx.12187.1.S1_at--443--9971Chr02:14679676..14679700 (25 bp)
TACCGTCGAGATGAAGCCATGCGAA
LOC_Os02g25240
OsAffx.12187.1.S1_at--1012--1291Chr02:14679668..14679692 (25 bp)
AGATGAAGCCATGCGAACCGGCGCA
LOC_Os02g25240
OsAffx.12187.1.S1_at--1108--5431Chr02:14679654..14679678 (25 bp)
GAACCGGCGCAATCATCGCCCGGTT
LOC_Os02g25240
OsAffx.12187.1.S1_at--696--4531Chr02:14679637..14679661 (25 bp)
GCCCGGTTGGGCGACGACCAAGGCA
LOC_Os02g25240
OsAffx.12187.1.S1_at--863--4071Chr02:14679626..14679650 (25 bp)
CGACGACCAAGGCAAGGAGCACGAA
LOC_Os02g25240
OsAffx.12187.1.S1_at--265--1711Chr02:14679621..14679645 (25 bp)
ACCAAGGCAAGGAGCACGAAGAAGA
LOC_Os02g25240
Target Sequence 
TACCGTGTCTGCACCTTCAACTCCGGCTTTTCATCCCTCTCCGGACCGGAGCCTTTCCGATACCGTCGAGATGAAGCCAT
GCGAACCGGCGCAATCATCGCCCGGTTGGGCGACGACCAAGGCAAGGAGCACGAAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis