Browse Element(s) Details


OsAffx.12243.1.S1_at

Description tigr:9630.m02669
TID=OsAffx.12243.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2805011/11hypothetical protein
LOC_Os07g116704/11retrotransposon protein, putative, unclassified
LOC_Os12g083301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28020NANA2+16585839..16589351retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28030OsAffx.2771.1.S1_at10/112+16590788..16592851hypothetical protein
LOC_Os02g28040Os.8097.1.A1_at10/112+16596799..16606368lipase class 3 family protein, putative, expressed
LOC_Os02g28040Os.52081.1.S1_at1/112+16596799..16606368lipase class 3 family protein, putative, expressed
LOC_Os02g28050OsAffx.12243.1.S1_at11/112+16609343..16610435hypothetical protein
LOC_Os02g28074Os.53092.1.S1_at11/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28074Os.17802.1.S1_at11/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28074Os.17016.1.S1_at1/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28100NANA2+16632414..16632620hypothetical protein
LOC_Os02g28110Os.54948.1.S1_at11/112+16633826..16635410Pyridoxal-dependent decarboxylase, pyridoxal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12243.1.S1_at--27--6571Chr02:16609582..16609606 (25 bp)
GATTAAGCCAGCTGGCCGATTGCAT
LOC_Os02g28050
OsAffx.12243.1.S1_at--960--10731Chr02:16609601..16609625 (25 bp)
TTGCATGGGAGGACTTCATCACTCC
LOC_Os02g28050
OsAffx.12243.1.S1_at--1112--2851Chr02:16609634..16609658 (25 bp)
AAGTGCGGACCCTATTGCTGTACAT
LOC_Os02g28050
OsAffx.12243.1.S1_at--368--1811Chr02:16609642..16609666 (25 bp)
ACCCTATTGCTGTACATTTTCCTGA
LOC_Os02g28050
OsAffx.12243.1.S1_at--658--172Chr07:6455166..6455188 (23 bp)
ATTTTCCTGAGTTGTATAGCATAGC
LOC_Os07g11670
OsAffx.12243.1.S1_at--507--7753Chr07:6455215..6455239 (25 bp)
GGTGTTATGAGTACAAGACCTTTAA
LOC_Os07g11670
OsAffx.12243.1.S1_at--650--9791Chr02:16609729..16609753 (25 bp)
TAAATGTTTACTTTCGGAGGGCTAT
LOC_Os02g28050
OsAffx.12243.1.S1_at--270--1892Chr07:6455333..6455357 (25 bp)
ACGATAGCTTCGTGTGGGAGGCACA
LOC_Os07g11670
OsAffx.12243.1.S1_at--354--2971Chr02:16609854..16609878 (25 bp)
AATGGGATCTTTTCTGTTAACTCGA
LOC_Os02g28050
OsAffx.12243.1.S1_at--297--9631Chr02:16609891..16609915 (25 bp)
TCATGTATAGGGACGTCATTCCAAA
LOC_Os02g28050
OsAffx.12243.1.S1_at--93--2973Chr07:6455854..6455878 (25 bp)
AATGGTCTTCGCTGCTTAAGGAGGA
LOC_Os07g11670
Target Sequence 
GATTAAGCCAGCTGGCCGATTGCATGGGAGGACTTCATCACTCCCAGCGTCCAAGTGCGGACCCTATTGCTGTACATTTT
CCTGAGTTGTATAGCATAGCGAGGAACAAGAATGAGTCAGTAGCAGGTGTTATGAGTACAAGACCTTTAAATGTTTACTT
TCGGAGGGCTATAGTGGGAAAGTATCTAAAAGATTGGTTAAAGGTAGTTGCAGAGGTTATTTTAGTAAGTTTAACAAATC
AGAACGATAGCTTCGTGTGGGAGGCACAGAAAAATGGGATCTTTTCTGTTAACTCGATGTATAAATCTATCATGTATAGG
GACGTCATTCCAAAAAATGATATGATCTGGAAACTCAAGGTGATTTTCAGGGGGACTTTTTGGGCAAGACAATGGTCTTC
GCTGCTTAAGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis