Browse Element(s) Details


Os.54948.1.S1_at

Description gb:AK107159.1
DB_XREF= gi:32992368
TID=Os.54948.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-E11, full insert sequence.
FL= gb:AK107159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2811011/11Pyridoxal-dependent decarboxylase, pyridoxal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28050OsAffx.12243.1.S1_at11/112+16609343..16610435hypothetical protein
LOC_Os02g28074Os.53092.1.S1_at11/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28074Os.17802.1.S1_at11/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28074Os.17016.1.S1_at1/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28100NANA2+16632414..16632620hypothetical protein
LOC_Os02g28110Os.54948.1.S1_at11/112+16633826..16635410Pyridoxal-dependent decarboxylase, pyridoxal binding domain containing protein, expressed
LOC_Os02g28120OsAffx.12244.1.S1_at11/112+16646594..16648663hypothetical protein
LOC_Os02g28120OsAffx.30891.1.S1_x_at2/112+16646594..16648663hypothetical protein
LOC_Os02g28130NANA2+16655024..16655625hypothetical protein
LOC_Os02g28140OsAffx.12245.1.S1_at7/112+16658237..16659346hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54948.1.S1_at--667--5771Chr02:16634299..16634323 (25 bp)
GACGACGGCATGTTCGGCACCCTGT
LOC_Os02g28110
Os.54948.1.S1_at--640--7311Chr02:16634276..16634300 (25 bp)
GTGCTGCGTGCACTTCGAGAACTAC
LOC_Os02g28110
Os.54948.1.S1_at--466--6031Chr02:16634182..16634206 (25 bp)
GAGATGATGATCACGTCGACGAACA
LOC_Os02g28110
Os.54948.1.S1_at--210--2471Chr02:16634161..16634185 (25 bp)
AACACGTCGACGAAGACGCACCCGT
LOC_Os02g28110
Os.54948.1.S1_at--131--8691Chr02:16634019..16634043 (25 bp)
TGTGCAGCTCAGACTTCAACGGGTT
LOC_Os02g28110
Os.54948.1.S1_at--1080--7671Chr02:16633999..16634023 (25 bp)
GGGTTCTCCACGTCCAACATGAAGA
LOC_Os02g28110
Os.54948.1.S1_at--1082--2491Chr02:16633984..16634008 (25 bp)
AACATGAAGACCTACCTCGCCTACT
LOC_Os02g28110
Os.54948.1.S1_at--257--3731Chr02:16633964..16633988 (25 bp)
CTACTCCTGCTAGATCACTGGGAAA
LOC_Os02g28110
Os.54948.1.S1_at--379--8151Chr02:16633944..16633968 (25 bp)
GGAAAGTGCCACCTAAATATCGAAT
LOC_Os02g28110
Os.54948.1.S1_at--838--31Chr02:16633917..16633941 (25 bp)
ATTGTTTCGTACATACCACCCAGGG
LOC_Os02g28110
Os.54948.1.S1_at--1111--6631Chr02:16633909..16633933 (25 bp)
GTACATACCACCCAGGGTCGGAAAT
LOC_Os02g28110
Target Sequence 
GACGACGGCATGTTCGGCACCCTGTGCTGCGTGCACTTCGAGAACTACGTGCCGCGCCCGGCGCCGGTGACCGCCACCGC
CGACGACGGCGACGAGCAGGCGGCGACCATGGGCGGCGAGATGATGATCACGTCGACGAACACGTCGACGAAGACGCACC
CGTCGACGGTGTTCGGCCCCACGCTGGACTCGTTCGACGAGGTGGTGAGGGGTTATCAGCTGCCGGAGCTGTGCACCGGG
GACTGGCTGGTGTTCGACGACGTCGGCGCGTACACCACCGTGTGCAGCTCAGACTTCAACGGGTTCTCCACGTCCAACAT
GAAGACCTACCTCGCCTACTCCTGCTAGATCACTGGGAAAGTGCCACCTAAATATCGAATATATTGTTTCGTACATACCA
CCCAGGGTCGGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis