Browse Element(s) Details


OsAffx.12245.1.S1_at

Description tigr:9630.m02678
TID=OsAffx.12245.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g281407/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28110Os.54948.1.S1_at11/112+16633826..16635410Pyridoxal-dependent decarboxylase, pyridoxal binding domain containing protein, expressed
LOC_Os02g28120OsAffx.12244.1.S1_at11/112+16646594..16648663hypothetical protein
LOC_Os02g28120OsAffx.30891.1.S1_x_at2/112+16646594..16648663hypothetical protein
LOC_Os02g28130NANA2+16655024..16655625hypothetical protein
LOC_Os02g28140OsAffx.12245.1.S1_at7/112+16658237..16659346hypothetical protein
LOC_Os02g28150OsAffx.22896.1.S1_x_at1/112+16664420..16666081transposon protein, putative, unclassified
LOC_Os02g28160OsAffx.21779.3.S1_at11/112+16667596..16668271hypothetical protein
LOC_Os02g28170Os.9456.1.S1_at11/112+16672418..16674160Transferase family protein, expressed
LOC_Os02g28180OsAffx.13052.2.S1_at11/112+16674535..16677212transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12245.1.S1_at--376--7751Chr02:16658267..16658291 (25 bp)
GGTGTCACACCGTACACGACACAGC
LOC_Os02g28140
OsAffx.12245.1.S1_at--1078--8731Chr02:16658269..16658293 (25 bp)
TGTCACACCGTACACGACACAGCTG
LOC_Os02g28140
OsAffx.12245.1.S1_at--114--7091Chr02:16658270..16658294 (25 bp)
GTCACACCGTACACGACACAGCTGA
LOC_Os02g28140
OsAffx.12245.1.S1_at--21--9711Chr02:16658271..16658295 (25 bp)
TCACACCGTACACGACACAGCTGAG
LOC_Os02g28140
OsAffx.12245.1.S1_at--154--8351Chr02:16658295..16658319 (25 bp)
GGCTGGGTAGTGTCATATGGGAGTT
LOC_Os02g28140
OsAffx.12245.1.S1_at--422--1111Chr02:16658303..16658327 (25 bp)
AGTGTCATATGGGAGTTGAGGCGCG
LOC_Os02g28140
OsAffx.12245.1.S1_at--372--6611NONE
GTTGAGGCGCGGAGTTCCTTCTTTC
NONE
OsAffx.12245.1.S1_at--698--10591NONE
TTGAGGCGCGGAGTTCCTTCTTTCG
NONE
OsAffx.12245.1.S1_at--738--8871NONE
TGAGGCGCGGAGTTCCTTCTTTCGG
NONE
OsAffx.12245.1.S1_at--119--6211NONE
GAGGCGCGGAGTTCCTTCTTTCGGC
NONE
OsAffx.12245.1.S1_at--737--1771Chr02:16659017..16659316 (25 bp)
ACCGGCAGCAACAAACCTGGACCTG
LOC_Os02g28140
Target Sequence 
GGTGTCACACCGTACACGACACAGCTGAGGCTGGGTAGTGTCATATGGGAGTTGAGGCGCGGAGTTCCTTCTTTCGGCGG
CCGACGGAGGCACCGGCGGGCGACGGCTACCTGCTTGGTGGCCAACCGGCGAGGTGCTCCGGAGGACACTCCACCGGCAG
CAACAAACCTGGACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis