Browse Element(s) Details


OsAffx.13052.2.S1_at

Description tigr:9630.m02682
TID=OsAffx.13052.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2818011/11transposon protein, putative, unclassified
LOC_Os03g263602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28130NANA2+16655024..16655625hypothetical protein
LOC_Os02g28140OsAffx.12245.1.S1_at7/112+16658237..16659346hypothetical protein
LOC_Os02g28150OsAffx.22896.1.S1_x_at1/112+16664420..16666081transposon protein, putative, unclassified
LOC_Os02g28160OsAffx.21779.3.S1_at11/112+16667596..16668271hypothetical protein
LOC_Os02g28170Os.9456.1.S1_at11/112+16672418..16674160Transferase family protein, expressed
LOC_Os02g28180OsAffx.13052.2.S1_at11/112+16674535..16677212transposon protein, putative, unclassified
LOC_Os02g28190NANA2+16684504..16684719hypothetical protein
LOC_Os02g28200OsAffx.12252.3.S1_x_at11/112+16686137..16687654Transferase family protein
LOC_Os02g28210OsAffx.24473.1.S1_at11/112+16693441..16693728hypothetical protein
LOC_Os02g28220Os.8902.1.S1_at11/112+16696291..16698079Transferase family protein, expressed
LOC_Os02g28230NANA2+16701068..16701373hypothetical protein
LOC_Os02g28240OsAffx.12252.1.S1_at11/112+16701967..16703216Transferase family protein
LOC_Os02g28240OsAffx.12252.3.S1_x_at2/112+16701967..16703216Transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0009639biological_processresponse to red or far red light
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13052.2.S1_at--1147--6591Chr02:16675931..16675955 (25 bp)
GATTGTATTCCTAAACTCAAGTCAC
LOC_Os02g28180
OsAffx.13052.2.S1_at--595--2391Chr02:16675943..16675967 (25 bp)
AAACTCAAGTCACTGTCTTTGCCTA
LOC_Os02g28180
OsAffx.13052.2.S1_at--46--1171Chr02:16675950..16675974 (25 bp)
AGTCACTGTCTTTGCCTATGGCATA
LOC_Os02g28180
OsAffx.13052.2.S1_at--443--9112Chr03:15052480..15052504 (25 bp)
TGCTGCAAAGCATCTAAGCCATGTA
LOC_Os03g26360
OsAffx.13052.2.S1_at--449--1692Chr03:15052496..15052520 (25 bp)
AGCCATGTAATCTCCAATAATCCTA
LOC_Os03g26360
OsAffx.13052.2.S1_at--1012--3011Chr02:16676019..16676043 (25 bp)
AATCCTAATTTTCTTCATGACTTTA
LOC_Os02g28180
OsAffx.13052.2.S1_at--61--5591Chr02:16676124..16676148 (25 bp)
GACAATTCTTGGATACAGAACTTGT
LOC_Os02g28180
OsAffx.13052.2.S1_at--277--1111Chr02:16676164..16676188 (25 bp)
AGTGGGCCACAATACAGAAGGTAGT
LOC_Os02g28180
OsAffx.13052.2.S1_at--919--9691Chr02:16676204..16676228 (25 bp)
TAAGGACGAAACAAGAGTCACCTTT
LOC_Os02g28180
OsAffx.13052.2.S1_at--841--5671Chr02:16677063..16677087 (25 bp)
GACATTTCGAGGATGTTCGTTCCGC
LOC_Os02g28180
OsAffx.13052.2.S1_at--425--6171Chr02:16677071..16677095 (25 bp)
GAGGATGTTCGTTCCGCCAATTCGA
LOC_Os02g28180
Target Sequence 
GATTGTATTCCTAAACTCAAGTCACTGTCTTTGCCTATGGCATATATACCAAAATGCTGCAAAGCATCTAAGCCATGTAA
TCTCCAATAATCCTAATTTTCTTCATGACTTTAAAAGATGTGTGTATGAAGAAAGGTCAGTGGCACACTTTAACTTCAAT
TGGCAAAAGTTGATATCTGATTACCACCTTGAAGACAATTCTTGGATACAGAACTTGTATGATTTGCGTGAGAAGTGGGC
CACAATACAGAAGGTAGTAACTGTGGATCACAGTAAGGACGAAACAAGAGTCACCTTTAATTCAGTTGATATGAATATAT
CATGTTCTTGCAGGAAGTATACCTGTCTTGGAGAAGAAACCACACAGCCATCAAACATAAATATAGCTGGAGCTTCGCAG
CCAACTGTTCAGGAACCACTTGACTCAAATATTGTGATGCCATTTGGTGACATTTCGAGGATGTTCGTTCCGCCAATTCG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13052.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis