Browse Element(s) Details


OsAffx.12252.3.S1_x_at

Description tigr:9630.m02684
TID=OsAffx.12252.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT002269 At5g39050MXF12_60, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2820011/11Transferase family protein
LOC_Os02g282402/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28150OsAffx.22896.1.S1_x_at1/112+16664420..16666081transposon protein, putative, unclassified
LOC_Os02g28160OsAffx.21779.3.S1_at11/112+16667596..16668271hypothetical protein
LOC_Os02g28170Os.9456.1.S1_at11/112+16672418..16674160Transferase family protein, expressed
LOC_Os02g28180OsAffx.13052.2.S1_at11/112+16674535..16677212transposon protein, putative, unclassified
LOC_Os02g28190NANA2+16684504..16684719hypothetical protein
LOC_Os02g28200OsAffx.12252.3.S1_x_at11/112+16686137..16687654Transferase family protein
LOC_Os02g28210OsAffx.24473.1.S1_at11/112+16693441..16693728hypothetical protein
LOC_Os02g28220Os.8902.1.S1_at11/112+16696291..16698079Transferase family protein, expressed
LOC_Os02g28230NANA2+16701068..16701373hypothetical protein
LOC_Os02g28240OsAffx.12252.1.S1_at11/112+16701967..16703216Transferase family protein
LOC_Os02g28240OsAffx.12252.3.S1_x_at2/112+16701967..16703216Transferase family protein
LOC_Os02g28250Os.26886.6.S1_s_at9/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250Os.26886.2.S1_s_at8/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250OsAffx.3425.1.S1_at1/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250OsAffx.5348.1.S1_at1/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28260Os.26886.3.S1_x_at4/112+16708471..16709810transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12252.3.S1_x_at--253--9391Chr02:16686681..16686705 (25 bp)
TCGTCACCGATCTCCGGTCACGGAT
LOC_Os02g28200
OsAffx.12252.3.S1_x_at--250--4571Chr02:16686598..16686622 (25 bp)
GCGCCCAGAACGGACATCGCTGCTG
LOC_Os02g28200
OsAffx.12252.3.S1_x_at--804--3411Chr02:16686593..16686617 (25 bp)
CAGAACGGACATCGCTGCTGCCGGC
LOC_Os02g28200
OsAffx.12252.3.S1_x_at--1031--3812Chr02:16686576..16686600 (25 bp)
CTGCCGGCGCGGATGGCCTATTCGC
LOC_Os02g28200
OsAffx.12252.3.S1_x_at--114--4672Chr02:16686568..16686592 (25 bp)
GCGGATGGCCTATTCGCGGCCTGCT
LOC_Os02g28200
OsAffx.12252.3.S1_x_at--242--5451Chr02:16686516..16686540 (25 bp)
GAACGAGATATGATCCCGGCTACTG
LOC_Os02g28200
OsAffx.12252.3.S1_x_at--976--3471Chr02:16686488..16686512 (25 bp)
CAGGTACAGGGAGCAGAGCTTAGAG
LOC_Os02g28200
OsAffx.12252.3.S1_x_at--719--5931Chr02:16686478..16686502 (25 bp)
GAGCAGAGCTTAGAGGTGAGCACCA
LOC_Os02g28200
OsAffx.12252.3.S1_x_at--125--3671Chr02:16686470..16686494 (25 bp)
CTTAGAGGTGAGCACCAGTGGTGCT
LOC_Os02g28200
OsAffx.12252.3.S1_x_at--319--4791Chr02:16686448..16686472 (25 bp)
GCTCCGCCGCTTTCGGTGGCTGGGT
LOC_Os02g28200
OsAffx.12252.3.S1_x_at--51--8431Chr02:16686241..16686265 (25 bp)
GGCCGTCGTCGTGATCCAGTGATAA
LOC_Os02g28200
Target Sequence 
TCGTCACCGATCTCCGGTCACGGATGGAACCCCGCGTCCCCGACAAGTACCTCGGAAACTGCGTCGGCCCGTGCTTCGCG
TCGGCGCCCAGAACGGACATCGCTGCTGCCGGCGCGGATGGCCTATTCGCGGCCTGCTCCGCGATCGCCGCCGCCGTGGA
CGAAGGAACGAGATATGATCCCGGCTACTGGGACAGGTACAGGGAGCAGAGCTTAGAGGTGAGCACCAGTGGTGCTCCGC
CGCTTTCGGTGGCTGGGTCGCCGAGGTTCCGCGTGTACGACGTGGACTTTGGGTTCGGGAGGCCGGCGAAGGTGGACGTC
GTGTCCGTGGCAAAGACCGGGGCGATGTCGGTGGCGGCGGCATTGAGGTGGGCATCGCTTTGCCGCCGGAGCGGATGGAG
AGGTTCCGGAGGTGCTTCGGCGAAGACGTCGCCGTCGCGTGGCCGTCGTCGTGATCCAGTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12252.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis