Browse Element(s) Details


OsAffx.12244.1.S1_at

Description tigr:9630.m02676
TID=OsAffx.12244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2812011/11hypothetical protein
LOC_Os07g181101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28074Os.53092.1.S1_at11/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28074Os.17802.1.S1_at11/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28074Os.17016.1.S1_at1/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28100NANA2+16632414..16632620hypothetical protein
LOC_Os02g28110Os.54948.1.S1_at11/112+16633826..16635410Pyridoxal-dependent decarboxylase, pyridoxal binding domain containing protein, expressed
LOC_Os02g28120OsAffx.12244.1.S1_at11/112+16646594..16648663hypothetical protein
LOC_Os02g28120OsAffx.30891.1.S1_x_at2/112+16646594..16648663hypothetical protein
LOC_Os02g28130NANA2+16655024..16655625hypothetical protein
LOC_Os02g28140OsAffx.12245.1.S1_at7/112+16658237..16659346hypothetical protein
LOC_Os02g28150OsAffx.22896.1.S1_x_at1/112+16664420..16666081transposon protein, putative, unclassified
LOC_Os02g28160OsAffx.21779.3.S1_at11/112+16667596..16668271hypothetical protein
LOC_Os02g28170Os.9456.1.S1_at11/112+16672418..16674160Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12244.1.S1_at--896--103313Chr10:7225378..7225399 (22 bp)
TTTAATCCCGTGGAAAGATCATAGC
NONE
OsAffx.12244.1.S1_at--797--97510Chr10:7225380..7225458 (25 bp)
TAATCCCGTGGAAAGATCATAGCAG
NONE
OsAffx.12244.1.S1_at--38--3054Chr06:23409966..23409985 (20 bp)
AATCCCGTGGAAAGATCATAGCAGA
NONE
OsAffx.12244.1.S1_at--445--553Chr02:16648580..16648604 (25 bp)
ATCCCGTGGAAAGATCATAGCAGAG
LOC_Os02g28120
OsAffx.12244.1.S1_at--430--2791Chr02:16648590..16648614 (25 bp)
AAGATCATAGCAGAGAGAACCGGAC
LOC_Os02g28120
OsAffx.12244.1.S1_at--894--1271Chr02:16648591..16648615 (25 bp)
AGATCATAGCAGAGAGAACCGGACT
LOC_Os02g28120
OsAffx.12244.1.S1_at--788--6431Chr02:16648592..16648616 (25 bp)
GATCATAGCAGAGAGAACCGGACTA
LOC_Os02g28120
OsAffx.12244.1.S1_at--688--411Chr02:16648593..16648617 (25 bp)
ATCATAGCAGAGAGAACCGGACTAA
LOC_Os02g28120
OsAffx.12244.1.S1_at--772--9571Chr02:16648594..16648618 (25 bp)
TCATAGCAGAGAGAACCGGACTAAT
LOC_Os02g28120
OsAffx.12244.1.S1_at--283--3572Chr11:14814339..14814772 (25 bp)
CATAGCAGAGAGAACCGGACTAATA
NONE
OsAffx.12244.1.S1_at--478--10012Chr02:16648597..16648621 (25 bp)
TAGCAGAGAGAACCGGACTAATAAT
LOC_Os02g28120
Target Sequence 
TTTAATCCCGTGGAAAGATCATAGCAGAGAGAACCGGACTAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis