Browse Element(s) Details


OsAffx.2771.1.S1_at

Description tigr:9630.m02667
TID=OsAffx.2771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2803010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27990NANA2+16569131..16569331hypothetical protein
LOC_Os02g28000NANA2+16574486..16575182retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28010OsAffx.22947.2.S1_x_at8/112+16577545..16583727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28010OsAffx.22947.3.S1_x_at4/112+16577545..16583727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28010OsAffx.22947.1.S1_x_at4/112+16577545..16583727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28010OsAffx.22947.5.S1_x_at2/112+16577545..16583727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28020NANA2+16585839..16589351retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28030OsAffx.2771.1.S1_at10/112+16590788..16592851hypothetical protein
LOC_Os02g28040Os.8097.1.A1_at10/112+16596799..16606368lipase class 3 family protein, putative, expressed
LOC_Os02g28040Os.52081.1.S1_at1/112+16596799..16606368lipase class 3 family protein, putative, expressed
LOC_Os02g28050OsAffx.12243.1.S1_at11/112+16609343..16610435hypothetical protein
LOC_Os02g28074Os.53092.1.S1_at11/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28074Os.17802.1.S1_at11/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28074Os.17016.1.S1_at1/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2771.1.S1_at--457--4691NONE
GCGGCGGCCGGCTAGGAAAAATATT
NONE
OsAffx.2771.1.S1_at--457--2791Chr02:16591241..16591265 (25 bp)
AAGAGTGATATCTTCCTAGTGGAAC
LOC_Os02g28030
OsAffx.2771.1.S1_at--258--8511Chr02:16591222..16591246 (25 bp)
TGGAACAACCTGACATTGATGACCT
LOC_Os02g28030
OsAffx.2771.1.S1_at--34--1071Chr02:16591172..16591196 (25 bp)
AGGGATTCAGAGGTGCAATACTTTG
LOC_Os02g28030
OsAffx.2771.1.S1_at--41--331Chr02:16590992..16591179 (25 bp)
ATACTTTGAGAATTGGAGCTGTGCA
LOC_Os02g28030
OsAffx.2771.1.S1_at--479--1251Chr02:16590967..16590991 (25 bp)
AGATTGGGATTTTCATCTTCCGGAT
LOC_Os02g28030
OsAffx.2771.1.S1_at--871--411Chr02:16590953..16590977 (25 bp)
ATCTTCCGGATGCTTCAACCAACAT
LOC_Os02g28030
OsAffx.2771.1.S1_at--1--1611Chr02:16590873..16590897 (25 bp)
AGCTGATCGAGAAACCCGGTGCTGT
LOC_Os02g28030
OsAffx.2771.1.S1_at--209--8351Chr02:16590845..16590869 (25 bp)
GGCTGTGGAATCAAAACACGCCCAA
LOC_Os02g28030
OsAffx.2771.1.S1_at--615--9691Chr02:16590835..16590859 (25 bp)
TCAAAACACGCCCAAAGGTCGAAGA
LOC_Os02g28030
OsAffx.2771.1.S1_at--166--7811Chr02:16590819..16590843 (25 bp)
GGTCGAAGAGGAACACCCAGAACAT
LOC_Os02g28030
Target Sequence 
GCGGCGGCCGGCTAGGAAAAATATTAAGACCTAGATCAATTGTTAAGAGTGATATCTTCCTAGTGGAACAACCTGACATT
GATGACCTGGAGAGGTGGGCAGCTGGAAAAGCAAGGGATTCAGAGGTGCAATACTTTGAGAATTGGAGCTGTGCAAGATT
GGGATTTTCATCTTCCGGATGCTTCAACCAACATCATAACCTTGATGATGTCCAAGCTGAGACAGGGGAACGAATTCTGG
AGCAATTTAAGCTGATCGAGAAACCCGGTGCTGTGGAGGCTGTGGAATCAAAACACGCCCAAAGGTCGAAGAGGAACACC
CAGAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis