Browse Element(s) Details


OsAffx.12302.1.S1_at

Description tigr:9630.m02979
TID=OsAffx.12302.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3105010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31020OsAffx.2816.1.S1_at11/112+18521053..18524165hypothetical protein
LOC_Os02g31030Os.36104.1.S1_at11/112+18531301..18534920glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os02g31040OsAffx.24519.1.S1_at11/112+18540823..185463662-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase family protein, expressed
LOC_Os02g31050OsAffx.12302.1.S1_at10/112+18547487..18548899hypothetical protein
LOC_Os02g31060OsAffx.12303.1.S1_at11/112+18550615..18550854hypothetical protein
LOC_Os02g31070Os.9275.1.S1_x_at11/112+18558372..18562655expressed protein
LOC_Os02g31074Os.54738.1.S1_at10/112+18563896..18567292expressed protein
LOC_Os02g31074Os.7658.1.S1_x_at1/112+18563896..18567292expressed protein
LOC_Os02g31080Os.14835.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.56036.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.1.S1_x_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.2.S1_at10/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12302.1.S1_at--843--4211Chr02:18548790..18548814 (25 bp)
CCGCCGTGAAGTGCCTCCATAGAGG
LOC_Os02g31050
OsAffx.12302.1.S1_at--785--8911Chr02:18548690..18548714 (25 bp)
TGAGCATCCCACGACACACAGAGAG
LOC_Os02g31050
OsAffx.12302.1.S1_at--367--1371Chr02:18548644..18548668 (25 bp)
AGAGCTTGCCCGTGTTGCTATGTCG
LOC_Os02g31050
OsAffx.12302.1.S1_at--915--3951Chr02:18548616..18548640 (25 bp)
CGGAGTACATCAACAGGTCAAGCCT
LOC_Os02g31050
OsAffx.12302.1.S1_at--417--3251Chr02:18548598..18548622 (25 bp)
CAAGCCTTGTGCGTGTCGTGCAGGA
LOC_Os02g31050
OsAffx.12302.1.S1_at--97--1551Chr02:18548306..18548330 (25 bp)
AGCATCATGGCCAATATCCTCACCG
LOC_Os02g31050
OsAffx.12302.1.S1_at--755--771Chr02:18548245..18548269 (25 bp)
ATGTCCGCGCACAGCTTGTACATGT
LOC_Os02g31050
OsAffx.12302.1.S1_at--1034--3611Chr02:18548231..18548255 (25 bp)
CTTGTACATGTCGTTGGTGTCACCC
LOC_Os02g31050
OsAffx.12302.1.S1_at--544--8491Chr02:18548205..18548229 (25 bp)
TGGCTTCCACCGACGACATGAAGAA
LOC_Os02g31050
OsAffx.12302.1.S1_at--349--2791Chr02:18548182..18548206 (25 bp)
AAGAGGAGCAACATGACCGCCGCAA
LOC_Os02g31050
OsAffx.12302.1.S1_at--933--5151NONE
GCAACCGATGCGTTTCAGCTGGTAT
NONE
Target Sequence 
CCGCCGTGAAGTGCCTCCATAGAGGGATCAACTACGGTGAGGTGGAGTGCTTTCGCGAGCCACGGTGCCTCGAGGCGTGC
CAGGGCCACCCGTACCTTGTTGAGCATCCCACGACACACAGAGAGATGAAGAGGGGTGGCGATGGCAGAGCTTGCCCGTG
TTGCTATGTCGTGACGGAGTACATCAACAGGTCAAGCCTTGTGCGTGTCGTGCAGGAGGAGCGGTGGTTGCTCGGCAGCA
TCATGGCCAATATCCTCACCGGCGGCCCACTCTTCCTCATCCCCACGCTGCATCGCCATGTCCGCGCACAGCTTGTACAT
GTCGTTGGTGTCACCCCTGGCTTCCACCGACGACATGAAGAAGAGGAGCAACATGACCGCCGCAACCGATGCGTTTCAGC
TGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis