Browse Element(s) Details


OsAffx.12334.1.S1_at

Description tigr:9630.m03164
TID=OsAffx.12334.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3331011/11F-box domain containing protein
LOC_Os02g333501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33250NANA2+19759364..19759774hypothetical protein
LOC_Os02g33260NANA2+19761712..19764578retrotransposon protein, putative, unclassified
LOC_Os02g33270OsAffx.940.1.S1_x_at1/112+19765434..19767521retrotransposon protein, putative, unclassified
LOC_Os02g33270OsAffx.22896.1.S1_x_at1/112+19765434..19767521retrotransposon protein, putative, unclassified
LOC_Os02g33280OsAffx.22722.1.S1_x_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33280OsAffx.22722.1.S1_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33280OsAffx.1646.1.S1_x_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33290Os.55352.1.S1_x_at11/112+19775905..19777735expressed protein
LOC_Os02g33300OsAffx.12333.1.S1_x_at11/112+19779468..19779782hypothetical protein
LOC_Os02g33310OsAffx.12334.1.S1_at11/112+19783277..19785110F-box domain containing protein
LOC_Os02g33320Os.50218.1.S1_at11/112+19785512..19790341RNA recognition motif family protein, expressed
LOC_Os02g33330Os.6723.1.S1_s_at11/112+19791948..19792850B-type cyclin, putative, expressed
LOC_Os02g33330Os.6723.1.S1_at11/112+19791948..19792850B-type cyclin, putative, expressed
LOC_Os02g33340NANA2+19802054..19806078retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12334.1.S1_at--282--3131Chr02:19784268..19784292 (25 bp)
AATTTCGAAGACTTGCATCTGCATG
LOC_Os02g33310
OsAffx.12334.1.S1_at--493--612Chr02:19784290..19784314 (25 bp)
ATGCACCTAATCTGTTGTATCTTAC
LOC_Os02g33310
OsAffx.12334.1.S1_at--1105--2971Chr02:19784338..19784362 (25 bp)
AATGTGATGCTGTTGCGGGTGACAA
LOC_Os02g33310
OsAffx.12334.1.S1_at--286--10171Chr02:19784414..19784435 (22 bp)
TATAAATGGCCCTTCCTTGACGTAT
LOC_Os02g33310
OsAffx.12334.1.S1_at--998--9431Chr02:19784529..19784553 (25 bp)
TCGGAAGGGTGCTTGTTGACCAAAC
LOC_Os02g33310
OsAffx.12334.1.S1_at--479--3131Chr02:19784634..19784658 (25 bp)
AATTTTTCGGAATGCCCCTATGTTG
LOC_Os02g33310
OsAffx.12334.1.S1_at--1040--1771Chr02:19784828..19784852 (25 bp)
ACCGGACGATTCTTGGAGTCAGCCA
LOC_Os02g33310
OsAffx.12334.1.S1_at--123--6171Chr02:19784943..19784967 (25 bp)
GAGGTTGATCTCGTTAGGCTGCTCC
LOC_Os02g33310
OsAffx.12334.1.S1_at--18--6251Chr02:19784971..19784995 (25 bp)
GATGGTCACCTGCATTGGAGGAACT
LOC_Os02g33310
OsAffx.12334.1.S1_at--464--6171Chr02:19785015..19785039 (25 bp)
GAGGATGTCCTGAACGATGCGTGCA
LOC_Os02g33310
OsAffx.12334.1.S1_at--916--8691Chr02:19785040..19785064 (25 bp)
TGTGCGAGTCTCTTACCAAGTTACT
LOC_Os02g33310
Target Sequence 
AATTTCGAAGACTTGCATCTGCATGCACCTAATCTGTTGTATCTTACACTCGACAAAACAGAAACAGAACAATGTGATGC
TGTTGCGGGTGACAAGAAAAATTATCCCAAGGAAGCTTTTGTCAGCCTAACTAGTATAGAACTTTCTATAAATGGCCCTT
CCTTGACGTATCTATCGGAAGGGTGCTTGTTGACCAAACCCCCAGGCGTGCTTGATCGTCTGAGGAAGGTCTTGGGTGCT
TGTTCAATTTTTCGGAATGCCCCTATGTTGAGAGAACTCGAGATACAGAGCTTCTCTCGACCGGACGATTCTTGGAGTCA
GCCAATATGGGATCATGATCAGACGGAGATCAAAGAGCCTACCTTGCATCACCTCCTGACGGCGACGATCACCGGTTTCG
TGGGGCTGGAATACGAGGTTGATCTCGTTAGGCTGCTCCTGAGATGGTCACCTGCATTGGAGGAACTGAAGGTGGTCAGG
GACGACGAGGATGTCCTGAACGATGCGTGCATGTGCGAGTCTCTTACCAAGTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis