Browse Element(s) Details


OsAffx.12339.1.S1_at

Description tigr:9630.m03239
TID=OsAffx.12339.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3406010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34040OsAffx.19542.3.S1_x_at5/112+20332600..20336824retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g34049NANA2+20338066..20338582NA
LOC_Os02g34060OsAffx.12339.1.S1_at10/112+20347821..20349145hypothetical protein
LOC_Os02g34070OsAffx.12340.1.S1_at11/112+20360283..20360835hypothetical protein
LOC_Os02g34080OsAffx.12341.1.S1_at10/112+20363499..20385387myosin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12339.1.S1_at--257--5251Chr02:20347862..20347886 (25 bp)
GAATCACCATGGCAATAAGTGTGCA
LOC_Os02g34060
OsAffx.12339.1.S1_at--137--6011Chr02:20347939..20347963 (25 bp)
GAGAGAGTGCTGACTATAAGCAGAA
LOC_Os02g34060
OsAffx.12339.1.S1_at--672--2091Chr02:20347975..20347999 (25 bp)
ACATCAACAGGGTCACGGACAAGAA
LOC_Os02g34060
OsAffx.12339.1.S1_at--613--1331Chr02:20348057..20348081 (25 bp)
AGAGGTGACATTTAACGTATATAAC
LOC_Os02g34060
OsAffx.12339.1.S1_at--51--3612Chr02:20348081..20348105 (25 bp)
CATTGACATGGAGATATTGGAGCTA
LOC_Os02g34060
OsAffx.12339.1.S1_at--1032--8071Chr02:20348099..20348123 (25 bp)
GGAGCTAATCATAACACACTCAGAT
LOC_Os02g34060
OsAffx.12339.1.S1_at--922--3291NONE
CACACTCAGATTTGGTCGAGCTTAA
NONE
OsAffx.12339.1.S1_at--700--2711Chr02:20348936..20348960 (25 bp)
AAGCATTGCCTCTGATCAAAGTCAA
LOC_Os02g34060
OsAffx.12339.1.S1_at--789--8572Chr02:20349027..20349051 (25 bp)
TGGTTCTTTTGTGGGTAGACGAAGA
LOC_Os02g34060
OsAffx.12339.1.S1_at--774--1391Chr02:20349043..20349067 (25 bp)
AGACGAAGATATGGCGCTACAGCGG
LOC_Os02g34060
OsAffx.12339.1.S1_at--1043--2151Chr02:20349061..20349085 (25 bp)
ACAGCGGTGTTTCCTCGCGCTGGCA
LOC_Os02g34060
Target Sequence 
GAATCACCATGGCAATAAGTGTGCAGAAAAGGATGATCAGAGTTTTGGGATGAGGGAGGAGAAGGCTGAGGATGGTAGAG
AGAGTGCTGACTATAAGCAGAAGAGGGTGATGGACATCAACAGGGTCACGGACAAGAATTGCAAGAGTAGGAAGAAAGAT
TTAGAATCAGAATATAGGTTTGATTGTGAGGATGAAGAGGTGACATTTAACGTATATAACATTGACATGGAGATATTGGA
GCTAATCATAACACACTCAGATTTGGTCGAGCTTAAAGCATTGCCTCTGATCAAAGTCAAAATGGTTCTTTTGTGGGTAG
ACGAAGATATGGCGCTACAGCGGTGTTTCCTCGCGCTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis