Browse Element(s) Details


OsAffx.12341.1.S1_at

Description tigr:9630.m03241
TID=OsAffx.12341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Z34293 from A. thaliana.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3408010/11myosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34049NANA2+20338066..20338582NA
LOC_Os02g34060OsAffx.12339.1.S1_at10/112+20347821..20349145hypothetical protein
LOC_Os02g34070OsAffx.12340.1.S1_at11/112+20360283..20360835hypothetical protein
LOC_Os02g34080OsAffx.12341.1.S1_at10/112+20363499..20385387myosin family protein, putative, expressed
LOC_Os02g34090OsAffx.2854.1.S1_at11/112+20386995..20387274hypothetical protein
LOC_Os02g34100OsAffx.12342.1.S1_at11/112+20391681..20392023hypothetical protein
LOC_Os02g34120Os.47631.1.S1_at9/112+20402512..20405911expressed protein
LOC_Os02g34120Os.38113.1.S2_at2/112+20402512..20405911expressed protein
LOC_Os02g34130NANA2+20407269..20410477transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0005777cellular_componentperoxisome
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12341.1.S1_at--987--1011Chr02:20382189..20382213 (25 bp)
AGGTCCCAAGAATCATGAAAGCCAG
LOC_Os02g34080
OsAffx.12341.1.S1_at--125--8971Chr02:20382204..20382436 (25 bp)
TGAAAGCCAGTATGGTCCCGGCAAT
LOC_Os02g34080
OsAffx.12341.1.S1_at--626--10111Chr02:20382425..20382446 (22 bp)
TATGGTCCCGGCAATTTTTATGAGG
LOC_Os02g34080
OsAffx.12341.1.S1_at--943--9931Chr02:20382455..20382479 (25 bp)
TACCCAAATTTTCTCATTCATCAAT
LOC_Os02g34080
OsAffx.12341.1.S1_at--1041--4531Chr02:20382480..20382588 (25 bp)
GCCCAACTTTTTAATAGCCTTCTTG
LOC_Os02g34080
OsAffx.12341.1.S1_at--415--10811Chr02:20382586..20382610 (25 bp)
TTGTACGCCATGAGTGCTGCTCTTT
LOC_Os02g34080
OsAffx.12341.1.S1_at--256--7611Chr02:20382663..20383049 (25 bp)
GGAGAAGTCAAACCAGAGTACGTAG
LOC_Os02g34080
OsAffx.12341.1.S1_at--212--1351NONE
AGAGTACGTAGGATCTGCATTGGAT
NONE
OsAffx.12341.1.S1_at--781--9051Chr02:20383054..20383078 (25 bp)
TGCATTGGATGAACTCAAGCACATA
LOC_Os02g34080
OsAffx.12341.1.S1_at--516--2011Chr02:20383074..20383098 (25 bp)
ACATAAGGCAAGCTGTTGGTTTCTT
LOC_Os02g34080
OsAffx.12341.1.S1_at--1140--6591Chr02:20384230..20384254 (25 bp)
GATTGTCAATGATCTGTGCCCAGTA
LOC_Os02g34080
Target Sequence 
AGGTCCCAAGAATCATGAAAGCCAGTATGGTCCCGGCAATTTTTATGAGGAAGATATTTACCCAAATTTTCTCATTCATC
AATGCCCAACTTTTTAATAGCCTTCTTGTACGCCATGAGTGCTGCTCTTTCAGCAATGGAGAGTATGTGAAACAAGGATT
AGCACAAATGGAGGTGTGGTGTGGAGAAGTCAAACCAGAGTACGTAGGATCTGCATTGGATGAACTCAAGCACATAAGGC
AAGCTGTTGGTTTCTTGGTCATATTTAAAAAATTCAGGATTTCATATGATGAGATTGTCAATGATCTGTGCCCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis