Browse Element(s) Details


Os.47631.1.S1_at

Description gb:BX901851
DB_XREF= gi:40491974
DB_XREF=BX901851
CLONE=p645f04p5
TID=Os.47631.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47631 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g341209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34080OsAffx.12341.1.S1_at10/112+20363499..20385387myosin family protein, putative, expressed
LOC_Os02g34090OsAffx.2854.1.S1_at11/112+20386995..20387274hypothetical protein
LOC_Os02g34100OsAffx.12342.1.S1_at11/112+20391681..20392023hypothetical protein
LOC_Os02g34120Os.47631.1.S1_at9/112+20402512..20405911expressed protein
LOC_Os02g34120Os.38113.1.S2_at2/112+20402512..20405911expressed protein
LOC_Os02g34130NANA2+20407269..20410477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34140OsAffx.12343.1.S1_at11/112+20411524..20411889hypothetical protein
LOC_Os02g34150OsAffx.12344.1.S1_at10/112+20416359..20418176hypothetical protein
LOC_Os02g34160NANA2+20420699..20428258transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47631.1.S1_at--338--3431Chr02:20405855..20405879 (25 bp)
CAGTTTTTCTTAGCTCCGTCATATG
LOC_Os02g34120
Os.47631.1.S1_at--694--1591Chr02:20405844..20405868 (25 bp)
AGCTCCGTCATATGTGCGGTGGCAA
LOC_Os02g34120
Os.47631.1.S1_at--994--2411Chr02:20405790..20405814 (25 bp)
AAAACAAGCAATTCGGCGTGGCCCT
LOC_Os02g34120
Os.47631.1.S1_at--936--8351Chr02:20405777..20405800 (24 bp)
GGCGTGGCCCTCTAGCCTATTTTTT
LOC_Os02g34120
Os.47631.1.S1_at--170--2431NONE
AAAACGAGCTATGCCGTCAAAGCAG
NONE
Os.47631.1.S1_at--447--7091Chr02:20405662..20405818 (25 bp)
GTCAAAGCAGACAATGTGTTCCAAC
LOC_Os02g34120
Os.47631.1.S1_at--772--10172Chr09:10262216..10262240 (25 bp)
TATCACAAGACCACGATACCCTATG
NONE
Os.47631.1.S1_at--388--6492Chr09:10262202..10262226 (25 bp)
GATACCCTATGGCAGAGACATGATT
NONE
Os.47631.1.S1_at--656--10412Chr09:10262111..10262135 (25 bp)
TTATTAATGAACCAGCTCACGAGCT
NONE
Os.47631.1.S1_at--1110--8292Chr09:10262039..10262063 (25 bp)
GGCTTATTAGTTTTCCATGCAGGGA
NONE
Os.47631.1.S1_at--373--6553Chr07:6505432..6505456 (25 bp)
GATTTTGTCATTGTTCACATGCTGG
NONE
Target Sequence 
CAGTTTTTCTTAGCTCCGTCATATGTGCGGTGGCAAACGACATGGNCGGTGATCCTATGAGGTCAAAAACAAGCAATTCG
GCGTGGCCCTCTAGCCTATTTTTTTTTATATTAAAACCATAAATATTTTTTAATTATAAAAATGGAGATAATTACAGTAT
CATGATAATTTGCTAAAACGAGCTATGCCGTCAAAGCAGACAATGTGTTCCAACATATTATTATCACAAGACCACGATAC
CCTATGGCAGAGACATGATTTTGTCAGATGTCTAGCATCTAATATAGCATATGCTTATTAATTTTTTTTAGATAATGAGC
ATATGCTTATTAATGAACCAGCTCACGAGCTGAGCCAAGCTAAGCTTTTAGTATTAGCTTTGTTAATGTTAATGAGCTGG
CTTATTAGTTTTCCATGCAGGGAGATTTCATCATTAGATTTTGTCATTGTTCACATGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis