Browse Element(s) Details


Os.38113.1.S2_at

Description gb:AK102339.1
DB_XREF= gi:32987548
TID=Os.38113.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0031C24.15 (OSJNBa0031C24.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091A22, full insert sequence.
FL= gb:AK108654.1 gb:AK102339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1177010/11expressed protein
LOC_Os09g167803/11hypothetical protein
LOC_Os02g341202/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11720NANA7+6479493..6480481Transposable element protein, putative, Retrotrans_gag
LOC_Os07g11739Os.38113.2.S1_at11/117+6492769..6500276Cytochrome P450 family protein, expressed
LOC_Os07g11739Os.38113.2.S1_a_at11/117+6492769..6500276Cytochrome P450 family protein, expressed
LOC_Os07g11760NANA7+6501701..6503652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11770Os.38113.1.S2_at10/117+6503949..6505389expressed protein
LOC_Os07g11780Os.26886.3.S1_x_at1/117+6509780..6510901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11790OsAffx.28405.1.S1_at11/117+6514319..6520348Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os07g11790OsAffx.28405.2.S1_x_at9/117+6514319..6520348Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os07g11800NANA7+6526592..6531013retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38113.1.S2_at--789--3033Chr07:6504825..6504849 (25 bp)
AATTAAAGGGCGAGTTGCAGTCTCA
LOC_Os07g11770
Os.38113.1.S2_at--150--5033Chr07:6504841..6504865 (25 bp)
GCAGTCTCAGCGTGAAGAGTTGAAT
LOC_Os07g11770
Os.38113.1.S2_at--812--5272Chr07:6504936..6504960 (25 bp)
GAATGAAAGCAATGTGGGCACGCAT
LOC_Os07g11770
Os.38113.1.S2_at--908--2752Chr07:6505104..6505128 (25 bp)
AAGACTGGCGTCGTGGAGTTGCTAC
LOC_Os07g11770
Os.38113.1.S2_at--243--10092Chr07:6505144..6505168 (25 bp)
TAGGCGAGCATCCTAGAGTCCGTGT
LOC_Os07g11770
Os.38113.1.S2_at--1096--6093Chr07:6505159..6505183 (25 bp)
GAGTCCGTGTCCCAAGTTTCATTTG
LOC_Os07g11770
Os.38113.1.S2_at--688--6833Chr07:6505174..6505198 (25 bp)
GTTTCATTTGTTGCTTAGGTGTTCA
LOC_Os07g11770
Os.38113.1.S2_at--202--1053Chr07:6505190..6505214 (25 bp)
AGGTGTTCAGTTATCAATTTAGTTA
LOC_Os07g11770
Os.38113.1.S2_at--254--5953Chr07:6505242..6505266 (25 bp)
GAGCACTTTGTTATCATTCATTAAT
LOC_Os07g11770
Os.38113.1.S2_at--568--2313Chr07:6505267..6505291 (25 bp)
AAAGGATAGTTTCCTCTAGTGTGAG
LOC_Os07g11770
Os.38113.1.S2_at--760--6071NONE
GAGTTTTGAAGTGCTTTATTCCAAG
NONE
Target Sequence 
AATTAAAGGGCGAGTTGCAGTCTCAGCGTGAAGAGTTGAATTCTCAGAAAAGAACCGTAGAGGAACAAAGTGGTCACATG
GAGNGTTTNTTGGNCCAGNAACTTGAGGAAAGAATGAAAGCAATGTGGGCACGCATGGGTGGCACTGGTGGTGCTTCATC
TTCAAGTGNCCCAAACAATTAAGAANTTCCAAGTTGACAAAGACTGGCGTCGTGGAGTTGCTACAAAGTTNTGTCCATCT
AGGCGAGCATCCTAGAGTCCGTGTCCCAAGTTTCATTTGTTGCTTAGGTGTTCAGTTATCAATTTAGTTATGGTCTTAGT
TNAAATGCTCTTTGTATGAGCACTTTGTTATCATTCATTAATAAAGGATAGTTTCCTCTAGTGTGAGGAACCCTTNTNNN
NNNNNGTGATATTTCAATTGAGTTTTGAAGTGCTTTATTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38113.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis