Browse Element(s) Details


Os.38113.2.S1_at

Description gb:AK065971.1
DB_XREF= gi:32975989
TID=Os.38113.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0031C24.15 (OSJNBa0031C24.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050H07, full insert sequence.
FL= gb:AK065971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1173911/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11700NANA7+6468848..6470320hypothetical protein
LOC_Os07g11710NANA7+6477530..6478006hypothetical protein
LOC_Os07g11720NANA7+6479493..6480481Transposable element protein, putative, Retrotrans_gag
LOC_Os07g11739Os.38113.2.S1_at11/117+6492769..6500276Cytochrome P450 family protein, expressed
LOC_Os07g11739Os.38113.2.S1_a_at11/117+6492769..6500276Cytochrome P450 family protein, expressed
LOC_Os07g11760NANA7+6501701..6503652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11770Os.38113.1.S2_at10/117+6503949..6505389expressed protein
LOC_Os07g11780Os.26886.3.S1_x_at1/117+6509780..6510901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11790OsAffx.28405.1.S1_at11/117+6514319..6520348Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os07g11790OsAffx.28405.2.S1_x_at9/117+6514319..6520348Terpene synthase family, metal binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38113.2.S1_at--23--3911Chr07:6499828..6499852 (25 bp)
CTGGTCGTAGAATATGTCCTGGGAT
LOC_Os07g11739
Os.38113.2.S1_at--97--4771Chr07:6499974..6499998 (25 bp)
GCTGCTAAATGCTCTGACCTAAATG
LOC_Os07g11739
Os.38113.2.S1_at--34--4811Chr07:6499984..6500008 (25 bp)
GCTCTGACCTAAATGTGTGTCCAGT
LOC_Os07g11739
Os.38113.2.S1_at--927--1211Chr07:6500006..6500030 (25 bp)
AGTTACTCACATTTCTTCGAGCTGT
LOC_Os07g11739
Os.38113.2.S1_at--968--10311Chr07:6500017..6500041 (25 bp)
TTTCTTCGAGCTGTGCGTAAATGCC
LOC_Os07g11739
Os.38113.2.S1_at--98--4431Chr07:6500039..6500063 (25 bp)
GCCAGTGTAACACAATGCATCTTCA
LOC_Os07g11739
Os.38113.2.S1_at--887--5491Chr07:6500073..6500097 (25 bp)
GAACAGCGCCCATAGTATATGTATG
LOC_Os07g11739
Os.38113.2.S1_at--902--7691Chr07:6500149..6500173 (25 bp)
GGGTCTTCGCGATTTCAAGATAACT
LOC_Os07g11739
Os.38113.2.S1_at--433--1271Chr07:6500166..6500190 (25 bp)
AGATAACTTATGTACCTGAGCAGAA
LOC_Os07g11739
Os.38113.2.S1_at--750--211Chr07:6500196..6500220 (25 bp)
ATATTGAGCCTACTTATGTACGTAC
LOC_Os07g11739
Os.38113.2.S1_at--441--10431Chr07:6500209..6500233 (25 bp)
TTATGTACGTACTTATGCTCTTAAT
LOC_Os07g11739
Target Sequence 
CTGGTCGTAGAATATGTCCTGGGATAAATCTTGGGTGGGCCAACATGGAATTTGCCTTGGCTAATCTTCTCTACCATTTT
GATTGGAATCTGCCCGATGGAATGTTGCACAAAGATCTTGATATGCAGGAGTCGCCCGGTCTTGTTGCTGCTAAATGCTC
TGACCTAAATGTGTGTCCAGTTACTCACATTTCTTCGAGCTGTGCGTAAATGCCAGTGTAACACAATGCATCTTCAAAAA
GATCAGAACAGCGCCCATAGTATATGTATGTACTGCCAGATATATATATGGGGTTGGTATATATGTGTGCTGTTAGATAT
GGGGTCTTCGCGATTTCAAGATAACTTATGTACCTGAGCAGAAAAAACATATTGAGCCTACTTATGTACGTACTTATGCT
CTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38113.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis