Browse Element(s) Details


OsAffx.28405.2.S1_x_at

Description tigr:9635.m01154
TID=OsAffx.28405.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g117909/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11739Os.38113.2.S1_at11/117+6492769..6500276Cytochrome P450 family protein, expressed
LOC_Os07g11739Os.38113.2.S1_a_at11/117+6492769..6500276Cytochrome P450 family protein, expressed
LOC_Os07g11760NANA7+6501701..6503652transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11770Os.38113.1.S2_at10/117+6503949..6505389expressed protein
LOC_Os07g11780Os.26886.3.S1_x_at1/117+6509780..6510901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11790OsAffx.28405.1.S1_at11/117+6514319..6520348Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os07g11790OsAffx.28405.2.S1_x_at9/117+6514319..6520348Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os07g11800NANA7+6526592..6531013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11810Os.45173.1.S1_x_at6/117+6531279..6533411retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11820NANA7+6539289..6540245transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11830NANA7+6543226..6546077transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28405.2.S1_x_at--756--7371Chr07:6516817..6516841 (25 bp)
GTGACGTTTCACTTCTACCAGAGGA
LOC_Os07g11790
OsAffx.28405.2.S1_x_at--452--3271NONE
CAACATTAAAGCGACCGGAGGTGCA
NONE
OsAffx.28405.2.S1_x_at--149--7931Chr07:6516228..6516252 (25 bp)
GGATTGGGCCTTGGCTAACCCTGAT
LOC_Os07g11790
OsAffx.28405.2.S1_x_at--128--9771Chr07:6516213..6516237 (25 bp)
TAACCCTGATGCTGGTAGGGCCTTT
LOC_Os07g11790
OsAffx.28405.2.S1_x_at--159--6151Chr07:6516185..6516209 (25 bp)
GAGGTGGCACGATTCATGGATGACT
LOC_Os07g11790
OsAffx.28405.2.S1_x_at--689--5691NONE
GACTTAGCTGCATCACACAGTGGGA
NONE
OsAffx.28405.2.S1_x_at--281--1271Chr07:6514476..6514500 (25 bp)
AGATACGCTTCAAGCACCGCGCGTT
LOC_Os07g11790
OsAffx.28405.2.S1_x_at--186--1631Chr07:6514437..6514461 (25 bp)
AGCGGATCGCCAACCTGTGCATGTC
LOC_Os07g11790
OsAffx.28405.2.S1_x_at--1062--3351Chr07:6514409..6514433 (25 bp)
CACCCTCCTATACCATGGCAAGAAG
LOC_Os07g11790
OsAffx.28405.2.S1_x_at--425--851Chr07:6514383..6514407 (25 bp)
ATGGCTTCAGCAATAGCCTGGAGCT
LOC_Os07g11790
OsAffx.28405.2.S1_x_at--567--6691Chr07:6514349..6514373 (25 bp)
GTTCGAGAGCCATTTTGTTAACCCA
LOC_Os07g11790
Target Sequence 
GTGACGTTTCACTTCTACCAGAGGACCTGAAGAGATTTTTTCTGAGCATAATAAGTAACTTTAGGGAGTTTGAGGATGAA
TTGGAACCACATGAGAAATATCGTAATTCTTACAACATTAAAGCGACCGGAGGTGCAATAGAGTTACCTGTTAGTTTAAT
TGTTGGCATGGGTGATATAGCAACTAAGGAGGTGTTGGATTGGGCCTTGGCTAACCCTGATGCTGGTAGGGCCTTTGCAG
AGGTGGCACGATTCATGGATGACTTAGCTGCATCACACAGTGGGAGGGACAAGATGGATGTGGCGAGCACTGTGGAGTGT
TACATGAACGAGCACGGGGTGACGAGAGAGGTCGCCGAGGCGAAGATCGCTGGAATGGCTGAGGACGGGTGGAAAAGCAT
GAACCAGATACGCTTCAAGCACCGCGCGTTCCTCCCGTTCGTGCAGCGGATCGCCAACCTGTGCATGTCCGCCACCCTCC
TATACCATGGCAAGAAGAATGGCTTCAGCAATAGCCTGGAGCTAAAGGATATGTTCGAGAGCCATTTTGTTAACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28405.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis