Browse Element(s) Details


OsAffx.2854.1.S1_at

Description tigr:9630.m03242
TID=OsAffx.2854.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3409011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34080OsAffx.12341.1.S1_at10/112+20363499..20385387myosin family protein, putative, expressed
LOC_Os02g34090OsAffx.2854.1.S1_at11/112+20386995..20387274hypothetical protein
LOC_Os02g34100OsAffx.12342.1.S1_at11/112+20391681..20392023hypothetical protein
LOC_Os02g34120Os.47631.1.S1_at9/112+20402512..20405911expressed protein
LOC_Os02g34120Os.38113.1.S2_at2/112+20402512..20405911expressed protein
LOC_Os02g34130NANA2+20407269..20410477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34140OsAffx.12343.1.S1_at11/112+20411524..20411889hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2854.1.S1_at--407--7071Chr02:20387214..20387238 (25 bp)
GTAAGGGAGAGGTCTGGCATCCAAT
LOC_Os02g34090
OsAffx.2854.1.S1_at--384--6151Chr02:20387206..20387230 (25 bp)
GAGGTCTGGCATCCAATTTGATCCA
LOC_Os02g34090
OsAffx.2854.1.S1_at--732--211Chr02:20387191..20387215 (25 bp)
ATTTGATCCAATTGACAGCTGTTGC
LOC_Os02g34090
OsAffx.2854.1.S1_at--147--591Chr02:20387186..20387210 (25 bp)
ATCCAATTGACAGCTGTTGCGACGA
LOC_Os02g34090
OsAffx.2854.1.S1_at--570--10751Chr02:20387180..20387204 (25 bp)
TTGACAGCTGTTGCGACGAGGCAGA
LOC_Os02g34090
OsAffx.2854.1.S1_at--26--9591Chr02:20387088..20387112 (25 bp)
TCATTCGCAGCCCAATCTAGAGCAG
LOC_Os02g34090
OsAffx.2854.1.S1_at--8--111Chr02:20387086..20387110 (25 bp)
ATTCGCAGCCCAATCTAGAGCAGTG
LOC_Os02g34090
OsAffx.2854.1.S1_at--601--4551Chr02:20387079..20387103 (25 bp)
GCCCAATCTAGAGCAGTGGTTCCTC
LOC_Os02g34090
OsAffx.2854.1.S1_at--197--3071Chr02:20387075..20387099 (25 bp)
AATCTAGAGCAGTGGTTCCTCCTCC
LOC_Os02g34090
OsAffx.2854.1.S1_at--1037--3531Chr02:20387050..20387074 (25 bp)
CATCTCCTCTTGCTAGATCTGGGCG
LOC_Os02g34090
OsAffx.2854.1.S1_at--532--9251Chr02:20387046..20387070 (25 bp)
TCCTCTTGCTAGATCTGGGCGCCGC
LOC_Os02g34090
Target Sequence 
GTAAGGGAGAGGTCTGGCATCCAATTTGATCCAATTGACAGCTGTTGCGACGAGGCAGAGGGAGTGGGAAGGGGTCATTC
GCAGCCCAATCTAGAGCAGTGGTTCCTCCTCCCATCTCCTCTTGCTAGATCTGGGCGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis