Browse Element(s) Details


OsAffx.12340.1.S1_at

Description tigr:9630.m03240
TID=OsAffx.12340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3407011/11hypothetical protein
LOC_Os02g178801/11Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34040OsAffx.19542.3.S1_x_at5/112+20332600..20336824retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g34049NANA2+20338066..20338582NA
LOC_Os02g34060OsAffx.12339.1.S1_at10/112+20347821..20349145hypothetical protein
LOC_Os02g34070OsAffx.12340.1.S1_at11/112+20360283..20360835hypothetical protein
LOC_Os02g34080OsAffx.12341.1.S1_at10/112+20363499..20385387myosin family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12340.1.S1_at--841--8351Chr02:20360409..20360433 (25 bp)
GGCGGCATCACTTGCGGAAGAGTCA
LOC_Os02g34070
OsAffx.12340.1.S1_at--782--3311Chr02:20360417..20360441 (25 bp)
CACTTGCGGAAGAGTCAAGAAGCTT
LOC_Os02g34070
OsAffx.12340.1.S1_at--795--8091Chr02:20360454..20360587 (25 bp)
GGAGCCAGCCCTACTCTTGACATAA
LOC_Os02g34070
OsAffx.12340.1.S1_at--324--1671Chr02:20360569..20360593 (25 bp)
AGCCCTACTCTTGACATAATCCTGG
LOC_Os02g34070
OsAffx.12340.1.S1_at--423--9912Chr02:20360574..20360598 (25 bp)
TACTCTTGACATAATCCTGGCTCCG
LOC_Os02g34070
OsAffx.12340.1.S1_at--17--9312Chr02:20360595..20360619 (25 bp)
TCCGCCCCTGCTTGGGAGAGAAATG
LOC_Os02g34070
OsAffx.12340.1.S1_at--1110--8191Chr02:20360621..20360645 (25 bp)
GGAAGGGCAAGGTGCATCCCTCGCT
LOC_Os02g34070
OsAffx.12340.1.S1_at--903--2871Chr02:20360623..20360647 (25 bp)
AAGGGCAAGGTGCATCCCTCGCTGT
LOC_Os02g34070
OsAffx.12340.1.S1_at--870--2891Chr02:20360629..20360653 (25 bp)
AAGGTGCATCCCTCGCTGTCACCGA
LOC_Os02g34070
OsAffx.12340.1.S1_at--784--3791Chr02:20360640..20360664 (25 bp)
CTCGCTGTCACCGACGGTGCTGGTG
LOC_Os02g34070
OsAffx.12340.1.S1_at--716--4051Chr02:20360673..20360697 (25 bp)
CGATGGCGGTACTCAGGGCGGAGGT
LOC_Os02g34070
Target Sequence 
GGCGGCATCACTTGCGGAAGAGTCAAGAAGCTTGAGAGTAGGGGCGGAGCCAGCCCTACTCTTGACATAATCCTGGCTCC
GCCCCTGCTTGGGAGAGAAATGGGGAAGGGCAAGGTGCATCCCTCGCTGTCACCGACGGTGCTGGTGGGTGGTGGCGATG
GCGGTACTCAGGGCGGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis