Browse Element(s) Details


OsAffx.12344.1.S1_at

Description tigr:9630.m03248
TID=OsAffx.12344.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3415010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34100OsAffx.12342.1.S1_at11/112+20391681..20392023hypothetical protein
LOC_Os02g34120Os.47631.1.S1_at9/112+20402512..20405911expressed protein
LOC_Os02g34120Os.38113.1.S2_at2/112+20402512..20405911expressed protein
LOC_Os02g34130NANA2+20407269..20410477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34140OsAffx.12343.1.S1_at11/112+20411524..20411889hypothetical protein
LOC_Os02g34150OsAffx.12344.1.S1_at10/112+20416359..20418176hypothetical protein
LOC_Os02g34160NANA2+20420699..20428258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34170NANA2+20431336..20434560transposon protein, putative, unclassified
LOC_Os02g34180NANA2+20435190..20441348transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12344.1.S1_at--360--6751NONE
GTTCAAGACCTCACTGAGATGCAGG
NONE
OsAffx.12344.1.S1_at--169--8912Chr03:20899396..20899417 (22 bp)
TGAGATGCAGGTGCCTCTGATTGCT
NONE
OsAffx.12344.1.S1_at--792--1032Chr03:20899388..20899412 (25 bp)
AGGTGCCTCTGATTGCTGGAAGCAA
NONE
OsAffx.12344.1.S1_at--392--4711Chr02:20417107..20417131 (25 bp)
GCTGGAAGCAAGTTATCCCTCTCAA
LOC_Os02g34150
OsAffx.12344.1.S1_at--25--5171Chr02:20417100..20417124 (25 bp)
GCAAGTTATCCCTCTCAATTGCAGG
LOC_Os02g34150
OsAffx.12344.1.S1_at--1144--4831Chr02:20417074..20417098 (25 bp)
GCTAATGTTGAACCAGAGCCAACTA
LOC_Os02g34150
OsAffx.12344.1.S1_at--36--1371Chr02:20417060..20417084 (25 bp)
AGAGCCAACTACTGACCGATTCGTC
LOC_Os02g34150
OsAffx.12344.1.S1_at--1084--4231Chr02:20416733..20417069 (25 bp)
CCGATTCGTCGATATCATGTTGCAA
LOC_Os02g34150
OsAffx.12344.1.S1_at--989--9771Chr02:20416682..20416706 (25 bp)
TAAGGTTAGTTTAGCATCTCAGCAG
LOC_Os02g34150
OsAffx.12344.1.S1_at--907--10011Chr02:20416671..20416695 (25 bp)
TAGCATCTCAGCAGTTTGTGGCTTG
LOC_Os02g34150
OsAffx.12344.1.S1_at--631--5031Chr02:20416661..20416685 (25 bp)
GCAGTTTGTGGCTTGTCACCAACAA
LOC_Os02g34150
Target Sequence 
GTTCAAGACCTCACTGAGATGCAGGTGCCTCTGATTGCTGGAAGCAAGTTATCCCTCTCAATTGCAGGGGCTAATGTTGA
ACCAGAGCCAACTACTGACCGATTCGTCGATATCATGTTGCAAGTGGATAAAGCAGAAAGCTGTAAGTATAAGGTTAGTT
TAGCATCTCAGCAGTTTGTGGCTTGTCACCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis