Browse Element(s) Details


OsAffx.12360.1.S1_at

Description tigr:9630.m03375
TID=OsAffx.12360.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to zinc finger protein 2. (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3546011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35420OsAffx.12359.1.S1_at9/112+21283983..21285873monooxygenase, putative
LOC_Os02g35420Os.51501.1.S2_at1/112+21283983..21285873monooxygenase, putative
LOC_Os02g35420Os.51501.1.S2_x_at1/112+21283983..21285873monooxygenase, putative
LOC_Os02g35429Os.3710.1.S1_at4/112+21289599..21290543Zinc finger, C3HC4 type family protein
LOC_Os02g35440NANA2+21298120..21298704E3 ubiquitin ligase EL5, putative
LOC_Os02g35450NANA2+21306134..21307006DNA-repair protein XRCC3, putative
LOC_Os02g35460OsAffx.12360.1.S1_at11/112+21309298..21310064hypothetical protein
LOC_Os02g35470Os.15189.1.S1_at11/112+21314076..21319253Calmodulin-binding protein, putative, expressed
LOC_Os02g35480Os.54711.1.S1_at11/112+21319579..21323853expressed protein
LOC_Os02g35490Os.49329.1.S1_at11/112+21324602..21329367MLO-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12360.1.S1_at--1014--3551Chr02:21309605..21309629 (25 bp)
CATACCATTTGTAGGTGCACCTGAA
LOC_Os02g35460
OsAffx.12360.1.S1_at--572--6171Chr02:21309654..21309678 (25 bp)
GAGGAGCTCAACCTAAGTTTGTCGC
LOC_Os02g35460
OsAffx.12360.1.S1_at--811--2831Chr02:21309668..21309692 (25 bp)
AAGTTTGTCGCTCCAGCCATCATAT
LOC_Os02g35460
OsAffx.12360.1.S1_at--489--10371Chr02:21309714..21309738 (25 bp)
TTTTCGTGTTGCTACTGTCCTAAGA
LOC_Os02g35460
OsAffx.12360.1.S1_at--476--2791Chr02:21309735..21309759 (25 bp)
AAGAGGTTCCAGAGCTCTCAGGCAT
LOC_Os02g35460
OsAffx.12360.1.S1_at--333--9491Chr02:21309750..21309774 (25 bp)
TCTCAGGCATTAGGTGGCCACCAGA
LOC_Os02g35460
OsAffx.12360.1.S1_at--699--1471Chr02:21309772..21309796 (25 bp)
AGAATGCACACAAGCTCCAGCGTAA
LOC_Os02g35460
OsAffx.12360.1.S1_at--757--2691Chr02:21309783..21309807 (25 bp)
AAGCTCCAGCGTAACCTTGCGAAGA
LOC_Os02g35460
OsAffx.12360.1.S1_at--575--8211Chr02:21309808..21309832 (25 bp)
GGAATCGAGAGGCTTTTCTATCAAT
LOC_Os02g35460
OsAffx.12360.1.S1_at--967--2911Chr02:21309864..21309888 (25 bp)
AAGGATGGAAGCTCTGCACTCTCTG
LOC_Os02g35460
OsAffx.12360.1.S1_at--331--3771Chr02:21309882..21309906 (25 bp)
CTCTCTGCTGAGTCTATCTGCAAAA
LOC_Os02g35460
Target Sequence 
CATACCATTTGTAGGTGCACCTGAATTCATGGGTGAGCAGATGGACAACGAGGAGCTCAACCTAAGTTTGTCGCTCCAGC
CATCATATCCTTCAAGGTTTCAGACAGAGTTTTCGTGTTGCTACTGTCCTAAGAGGTTCCAGAGCTCTCAGGCATTAGGT
GGCCACCAGAATGCACACAAGCTCCAGCGTAACCTTGCGAAGAGGAATCGAGAGGCTTTTCTATCAATAAGCCAAAGGAA
GGGTGCAAATGCTGGAATAAAGGATGGAAGCTCTGCACTCTCTGCTGAGTCTATCTGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis