Browse Element(s) Details


OsAffx.12429.1.S1_at

Description tigr:9630.m03912
TID=OsAffx.12429.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4049010/1160S ribosomal protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40470NANA2+24535169..24536827retrotransposon, putative, centromere-specific
LOC_Os02g40480NANA2+24539576..24542719retrotransposon protein, putative, unclassified
LOC_Os02g40490OsAffx.12429.1.S1_at10/112+24554307..2455737760S ribosomal protein, putative
LOC_Os02g40500OsAffx.2928.1.S1_at11/112+24560450..24562239Glutaredoxin, putative, expressed
LOC_Os02g40510Os.26572.1.S1_at11/112+24563620..24566537Two-component response regulator-like PRR1, putative, expressed
LOC_Os02g40520NANA2+24572108..24572527hypothetical protein
LOC_Os02g40530Os.49829.1.S1_at11/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40530Os.57514.1.S1_x_at1/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12429.1.S1_at--942--3351NONE
CACCCTCGCTGCAAGAATCATCAGA
NONE
OsAffx.12429.1.S1_at--1117--991Chr02:24555393..24555417 (25 bp)
AGGATATGCCGCTGGGACTGATACT
LOC_Os02g40490
OsAffx.12429.1.S1_at--143--8651Chr02:24555405..24555429 (25 bp)
TGGGACTGATACTGAGCTCGCTCGG
LOC_Os02g40490
OsAffx.12429.1.S1_at--384--9391Chr02:24555434..24555458 (25 bp)
TCGATGCGGCGTAAGCGGCTGTCCT
LOC_Os02g40490
OsAffx.12429.1.S1_at--349--1091Chr02:24555482..24555506 (25 bp)
AGGGCGCCTCGGGATTACTACAAGG
LOC_Os02g40490
OsAffx.12429.1.S1_at--890--8171Chr02:24555507..24555531 (25 bp)
GGAAGAACTGCAAGCCCACCGGGTT
LOC_Os02g40490
OsAffx.12429.1.S1_at--1000--1211Chr02:24556814..24556838 (25 bp)
AGTTGCCAAGATTTGTGGTCCCTGA
LOC_Os02g40490
OsAffx.12429.1.S1_at--1070--8591Chr02:24556829..24556853 (25 bp)
TGGTCCCTGACTTGACTGATTTCAA
LOC_Os02g40490
OsAffx.12429.1.S1_at--313--2811Chr02:24557286..24557309 (24 bp)
AAGTTGAAGCCGTACGTGTCACAAT
LOC_Os02g40490
OsAffx.12429.1.S1_at--492--7451Chr02:24557300..24557324 (25 bp)
GTGTCACAATGTGCCAGGGACATCA
LOC_Os02g40490
OsAffx.12429.1.S1_at--740--1071Chr02:24557315..24557339 (25 bp)
AGGGACATCACAGCGTCATCGGCAT
LOC_Os02g40490
Target Sequence 
CACCCTCGCTGCAAGAATCATCAGAAAGGAGGAGGAGGATATGCCGCTGGGACTGATACTGAGCTCGCTCGGAAGGTCGA
TGCGGCGTAAGCGGCTGTCCTCGCTCGGCATCCTCTCCTCCAAGAGGGCGCCTCGGGATTACTACAAGGGGAAGAACTGC
AAGCCCACCGGGTTCCACACCCGCAAAGGTGGATATGTTATGGTGGATGAGAAGTTGCCAAGATTTGTGGTCCCTGACTT
GACTGATTTCAAGTTGAAGCCGTACGTGTCACAATGTGCCAGGGACATCACAGCGTCATCGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis