Browse Element(s) Details


Os.49829.1.S1_at

Description gb:AK111807.1
DB_XREF= gi:37988470
TID=Os.49829.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104N22, full insert sequence.
FL= gb:AK099283.1 gb:AK111807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4053011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40490OsAffx.12429.1.S1_at10/112+24554307..2455737760S ribosomal protein, putative
LOC_Os02g40500OsAffx.2928.1.S1_at11/112+24560450..24562239Glutaredoxin, putative, expressed
LOC_Os02g40510Os.26572.1.S1_at11/112+24563620..24566537Two-component response regulator-like PRR1, putative, expressed
LOC_Os02g40520NANA2+24572108..24572527hypothetical protein
LOC_Os02g40530Os.49829.1.S1_at11/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40530Os.57514.1.S1_x_at1/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40540OsAffx.24662.1.S1_at10/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.24662.1.S1_x_at10/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.9323.1.S1_at5/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.18095.1.S1_x_at1/112+24586467..24587608hypothetical protein
LOC_Os02g40550Os.53063.1.S1_at11/112+24589318..24591097Lung seven transmembrane receptor family protein, expressed
LOC_Os02g40560OsAffx.24663.1.S1_at11/112+24591301..24592017hypothetical protein
LOC_Os02g40570OsAffx.22848.3.S1_x_at3/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40570OsAffx.22848.4.S1_at2/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40570OsAffx.22848.4.S1_x_at1/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49829.1.S1_at--504--1851Chr02:24575044..24575068 (25 bp)
ACGACATGATGATCGACTGCGCCGC
LOC_Os02g40530
Os.49829.1.S1_at--1092--4891Chr02:24574996..24575020 (25 bp)
GCTTCCCTCCGCTACAGGATAAAGG
LOC_Os02g40530
Os.49829.1.S1_at--575--991Chr02:24574981..24575005 (25 bp)
AGGATAAAGGCCTCGCTTTCTACTA
LOC_Os02g40530
Os.49829.1.S1_at--1126--9831Chr02:24574915..24574939 (25 bp)
TACAAGCCTACACACTCTACAAGTA
LOC_Os02g40530
Os.49829.1.S1_at--218--9591Chr02:24574876..24574900 (25 bp)
TCTTGTGCATCGATCCAAACTGATA
LOC_Os02g40530
Os.49829.1.S1_at--182--2391Chr02:24574860..24574884 (25 bp)
AAACTGATAGCACACAGCAGCCTGT
LOC_Os02g40530
Os.49829.1.S1_at--170--1291Chr02:24574791..24574815 (25 bp)
AGAGGCCATTTTGTGTACACGAAGT
LOC_Os02g40530
Os.49829.1.S1_at--219--2491Chr02:24574748..24574772 (25 bp)
AACACCAACTATACTCCACTTTGAG
LOC_Os02g40530
Os.49829.1.S1_at--833--2031Chr02:24574731..24574755 (25 bp)
ACTTTGAGTAGCTAGCTCGCCTCGA
LOC_Os02g40530
Os.49829.1.S1_at--576--10751Chr02:24574689..24574713 (25 bp)
TTGAGAGCGCTTTTTCTAGGAGAAA
LOC_Os02g40530
Os.49829.1.S1_at--212--7431Chr02:24574589..24574613 (25 bp)
GTGTTAAAAGTGCATCTGAGCTCTT
LOC_Os02g40530
Target Sequence 
ACGACATGATGATCGACTGCGCCGCCGGCGCCGGCTGCTGCNGGGGTAGCTTCCCTCCGCTACAGGATAAAGGCCTCGCT
TTCTACTAGCTATAGCTTAACGATTACTAAATTGCTAGCTAGCTATAGCTACAAGCCTACACACTCTACAAGTAGATGTT
CCTTTTGGTCTTGTGCATCGATCCAAACTGATAGCACACAGCAGCCTGTGCGTGTGGAGGAGGTCACACGTAGTGACTAT
GCAGGTGAGAGCGAGAGGCCATTTTGTGTACACGAAGTGTTGGTGGATAAGGATGCAACACCAACTATACTCCACTTTGA
GTAGCTAGCTCGCCTCGATGGCATGTTTGGCTCATTTGAGAGCGCTTTTTCTAGGAGAAAAAGGAAGGGAAGAGTTTTTT
TCTTTGTTTTGCTTTTGGAGAAAGAATATAGGAGGACTGCAGGGGGGAAAATCAGGTGTTAAAAGTGCATCTGAGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis