Browse Element(s) Details


Os.26572.1.S1_at

Description gb:AK111828.1
DB_XREF= gi:37988491
TID=Os.26572.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064H19, full insert sequence.
FL= gb:AK111828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4051011/11Two-component response regulator-like PRR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40480NANA2+24539576..24542719retrotransposon protein, putative, unclassified
LOC_Os02g40490OsAffx.12429.1.S1_at10/112+24554307..2455737760S ribosomal protein, putative
LOC_Os02g40500OsAffx.2928.1.S1_at11/112+24560450..24562239Glutaredoxin, putative, expressed
LOC_Os02g40510Os.26572.1.S1_at11/112+24563620..24566537Two-component response regulator-like PRR1, putative, expressed
LOC_Os02g40520NANA2+24572108..24572527hypothetical protein
LOC_Os02g40530Os.49829.1.S1_at11/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40530Os.57514.1.S1_x_at1/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40540OsAffx.24662.1.S1_at10/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.24662.1.S1_x_at10/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.9323.1.S1_at5/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.18095.1.S1_x_at1/112+24586467..24587608hypothetical protein
LOC_Os02g40550Os.53063.1.S1_at11/112+24589318..24591097Lung seven transmembrane receptor family protein, expressed
LOC_Os02g40560OsAffx.24663.1.S1_at11/112+24591301..24592017hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007623biological_processcircadian rhythm
GO:0009266biological_processresponse to temperature stimulus
GO:0009640biological_processphotomorphogenesis
GO:0010017biological_processred or far red light signaling pathway
GO:0010031biological_processcircumnutation
GO:0016310biological_processphosphorylation
GO:0042752biological_processregulation of circadian rhythm
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26572.1.S1_at--859--2251Chr02:24565956..24565980 (25 bp)
AAATATGTGGCCACAGGCATCAAGC
LOC_Os02g40510
Os.26572.1.S1_at--233--2171Chr02:24565981..24566005 (25 bp)
ACACCAATGCCCGAGGAAACATGTA
LOC_Os02g40510
Os.26572.1.S1_at--778--10051Chr02:24566004..24566028 (25 bp)
TAGTCGGTCTGAACGGAGAGCTGCA
LOC_Os02g40510
Os.26572.1.S1_at--1039--5991Chr02:24566019..24566043 (25 bp)
GAGAGCTGCAGCACTTGCCAAATTC
LOC_Os02g40510
Os.26572.1.S1_at--1070--5531Chr02:24566100..24566124 (25 bp)
GAAACTTGCTGAAACAAGGCCGAGG
LOC_Os02g40510
Os.26572.1.S1_at--642--4611Chr02:24566127..24566151 (25 bp)
GCGAGGGCAATTTGTTAGACAGGCA
LOC_Os02g40510
Os.26572.1.S1_at--247--6251Chr02:24566229..24566253 (25 bp)
GATGGTTTCTTCTCCAGAGTAGTTT
LOC_Os02g40510
Os.26572.1.S1_at--837--9911Chr02:24566292..24566316 (25 bp)
TACTGCTCACTTTGCAACTCATTAG
LOC_Os02g40510
Os.26572.1.S1_at--506--9571Chr02:24566333..24566357 (25 bp)
TCTTCTGCTTTTAACTAGGCAATAC
LOC_Os02g40510
Os.26572.1.S1_at--515--951Chr02:24566398..24566422 (25 bp)
AGGAACTTGTGGCATATCCATCACT
LOC_Os02g40510
Os.26572.1.S1_at--775--6331Chr02:24566485..24566509 (25 bp)
GATGCATAGGCCAGTCTAGATCGTA
LOC_Os02g40510
Target Sequence 
AAATATGTGGCCACAGGCATCAAGCACACCAATGCCCGAGGAAACATGTAGTCGGTCTGAACGGAGAGCTGCAGCACTTG
CCAAATTCAGGCTGAAAAGGAAGGAACGTTGTTTTGACAAGAAGGTGAGGTACGTGAATAGGAAGAAACTTGCTGAAACA
AGGCCGAGGGTGCGAGGGCAATTTGTTAGACAGGCAAACTATACAGATATAACCAGCACTGGAGATGATATCTCAGAAGA
TGAAGATGATGATCCATCCTCCAGGGAGGTAGAGATGGTTTCTTCTCCAGAGTAGTTTGAAAGGTTTTCCTATATGTAAA
ATAGAGTGCAGATGATTACTGCTCACTTTGCAACTCATTAGATGTAGGCAATACATTTCTTCTGCTTTTAACTAGGCAAT
ACATCCACTCGCTCACACACAATACATCCTTTTTGTCCCCCAAGGAACTTGTGGCATATCCATCACTGTTACTATGGACG
TTTTGGAGAAAATCATCTTTGAAGGTGAGATGTAATTATGCTAGTTAGTGATGCATAGGCCAGTCTAGATCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis