Browse Element(s) Details


OsAffx.24663.1.S1_at

Description tigr:9630.m03919
TID=OsAffx.24663.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4056011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40510Os.26572.1.S1_at11/112+24563620..24566537Two-component response regulator-like PRR1, putative, expressed
LOC_Os02g40520NANA2+24572108..24572527hypothetical protein
LOC_Os02g40530Os.49829.1.S1_at11/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40530Os.57514.1.S1_x_at1/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40540OsAffx.24662.1.S1_at10/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.24662.1.S1_x_at10/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.9323.1.S1_at5/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.18095.1.S1_x_at1/112+24586467..24587608hypothetical protein
LOC_Os02g40550Os.53063.1.S1_at11/112+24589318..24591097Lung seven transmembrane receptor family protein, expressed
LOC_Os02g40560OsAffx.24663.1.S1_at11/112+24591301..24592017hypothetical protein
LOC_Os02g40570OsAffx.22848.3.S1_x_at3/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40570OsAffx.22848.4.S1_at2/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40570OsAffx.22848.4.S1_x_at1/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40580NANA2+24605906..24612410retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24663.1.S1_at--639--511Chr02:24591876..24591900 (25 bp)
ATCGTACTCCTGTTCGTTGGCCTCG
LOC_Os02g40560
OsAffx.24663.1.S1_at--131--7911Chr02:24591842..24591866 (25 bp)
GGTTGTTTTACCTCATAGCTGTGTC
LOC_Os02g40560
OsAffx.24663.1.S1_at--22--311Chr02:24591828..24591852 (25 bp)
ATAGCTGTGTCCACCAGGGATCTGG
LOC_Os02g40560
OsAffx.24663.1.S1_at--208--1051Chr02:24591813..24591837 (25 bp)
AGGGATCTGGTTTACTCCGCCTCGA
LOC_Os02g40560
OsAffx.24663.1.S1_at--261--1051Chr02:24591704..24591728 (25 bp)
AGGTGACCAACTACCCAAACTGCAT
LOC_Os02g40560
OsAffx.24663.1.S1_at--744--3271Chr02:24591689..24591713 (25 bp)
CAAACTGCATCTGGCCTGGTACAAC
LOC_Os02g40560
OsAffx.24663.1.S1_at--1029--8571Chr02:24591673..24591697 (25 bp)
TGGTACAACCGTGGAGGTCACCTAC
LOC_Os02g40560
OsAffx.24663.1.S1_at--638--7231Chr02:24591486..24591510 (25 bp)
GTCGCGGTGAAGATCCCGACCGTCA
LOC_Os02g40560
OsAffx.24663.1.S1_at--301--8891Chr02:24591362..24591386 (25 bp)
TGAGGACTCCGTGCCATGCGTCCAG
LOC_Os02g40560
OsAffx.24663.1.S1_at--747--611Chr02:24591347..24591371 (25 bp)
ATGCGTCCAGTACGGACATCGCTGC
LOC_Os02g40560
OsAffx.24663.1.S1_at--136--3531Chr02:24591331..24591355 (25 bp)
CATCGCTGCGTCATACCCAAACAAG
LOC_Os02g40560
Target Sequence 
ATCGTACTCCTGTTCGTTGGCCTCGCTGTCGGCGGGTTGTTTTACCTCATAGCTGTGTCCACCAGGGATCTGGTTTACTC
CGCCTCGATCGACGCCGTCTCCGGCCTCGATCTCGACCACCCGACGCTGGACCCGGTGTTCAACCTCACAGTCCGCCTCT
CCTCGCAGAACCAGGTGACCAACTACCCAAACTGCATCTGGCCTGGTACAACCGTGGAGGTCACCTACCGCGGCGTCCAG
CTCGCCATCGGGTCCGTGGAGCAGCTCTGCGTCGGGGCGCGGGAGACGAAGGAGCAGCACGTCGTCGCGTGGGGCGCCGG
CGTGCGCTTGCCGGGCTCCGCGCTGGACGCGCTCGCGGCGGACGCGCGGCGCGGGGCGGAGGCGTTCGACGTCGCGGTGA
AGATCCCGACCGTCATCCACAGTGGCTACCACAGCTACGACCCCCGCCACGTCCACCTGGGGACGCTTGTGTCGTGCATG
TCGAGGCGGGTCGGGGACGACCCCGTCGCCGCGCTGAGGACTCCGTGCCATGCGTCCAGTACGGACATCGCTGCGTCATA
CCCAAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis