Browse Element(s) Details


OsAffx.12466.1.S1_at

Description tigr:9630.m04121
TID=OsAffx.12466.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4297011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42950Os.54793.1.S1_at11/112+25833450..25836836yabby15 protein, putative, expressed
LOC_Os02g42960Os.27679.1.A1_at11/112+25849743..25853160expressed protein
LOC_Os02g42970OsAffx.12466.1.S1_at11/112+25853635..25855114No apical meristem protein
LOC_Os02g42980NANA2+25866512..25866909transposon protein, putative, unclassified
LOC_Os02g42990OsAffx.24695.1.S1_at11/112+25873125..25873697Auxin responsive protein, expressed
LOC_Os02g43000OsAffx.12467.1.S1_at10/112+25879153..25880901receptor-like protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0010089biological_processxylem histogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12466.1.S1_at--949--3391Chr02:25854084..25854108 (25 bp)
CAGCTGCAGCAGATGTACGGTCACT
LOC_Os02g42970
OsAffx.12466.1.S1_at--812--9911Chr02:25854069..25854093 (25 bp)
TACGGTCACTGCAAGCCGGAGCTGG
LOC_Os02g42970
OsAffx.12466.1.S1_at--146--431Chr02:25854005..25854029 (25 bp)
ATCTTCCTCAGCTGGAGAGCCCCAA
LOC_Os02g42970
OsAffx.12466.1.S1_at--998--10471Chr02:25853909..25853933 (25 bp)
TTACTACTCACGACGACGAAGCCTC
LOC_Os02g42970
OsAffx.12466.1.S1_at--1059--4491Chr02:25853860..25853884 (25 bp)
GCCGTCGTTGGAGGCTGTTTACATG
LOC_Os02g42970
OsAffx.12466.1.S1_at--2--8951Chr02:25853798..25853822 (25 bp)
TGACGGACTGGAGGCTACTGGACAA
LOC_Os02g42970
OsAffx.12466.1.S1_at--474--4651Chr02:25853766..25853790 (25 bp)
GCGTCTCAGCTGCTCAGCAAGGAGT
LOC_Os02g42970
OsAffx.12466.1.S1_at--1069--2911Chr02:25853748..25853772 (25 bp)
AAGGAGTCCATGTCCAGCTACGGAT
LOC_Os02g42970
OsAffx.12466.1.S1_at--749--551Chr02:25853720..25853744 (25 bp)
ATCCGGCTCAGGTGTTTCAGGCTGC
LOC_Os02g42970
OsAffx.12466.1.S1_at--811--10531Chr02:25853705..25853729 (25 bp)
TTCAGGCTGCAGACGGTGGCAAGCA
LOC_Os02g42970
OsAffx.12466.1.S1_at--228--1331Chr02:25853677..25853701 (25 bp)
AGAGGCTTTGGACTACGCTTCGACG
LOC_Os02g42970
Target Sequence 
CAGCTGCAGCAGATGTACGGTCACTGCAAGCCGGAGCTGGAGTACCACCACCTCCTGCCGCAGGAGGCCTTCCTGCAGCA
TCTTCCTCAGCTGGAGAGCCCCAAGCCGCCGCCGCCGCCTCCTGCGGCGGCGGCCTACATTGGCGGCCACCTCGGATCGT
CGTCGTCCACCGCCCTTACTACTCACGACGACGAAGCCTCCGGCTCCGCCGCGCAGCAGCAGCCGCCGTCGTTGGAGGCT
GTTTACATGGCCGGCGCCGGCGTCGGCATCGGCGTCGACGCGTCGGTGACGGACTGGAGGCTACTGGACAAGTTCGTCGC
GTCTCAGCTGCTCAGCAAGGAGTCCATGTCCAGCTACGGATCCCATCCGGCTCAGGTGTTTCAGGCTGCAGACGGTGGCA
AGCATGAAGAGGCTTTGGACTACGCTTCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis