Browse Element(s) Details


OsAffx.12467.1.S1_at

Description tigr:9630.m04124
TID=OsAffx.12467.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to secretory protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4300010/11receptor-like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42970OsAffx.12466.1.S1_at11/112+25853635..25855114No apical meristem protein
LOC_Os02g42980NANA2+25866512..25866909transposon protein, putative, unclassified
LOC_Os02g42990OsAffx.24695.1.S1_at11/112+25873125..25873697Auxin responsive protein, expressed
LOC_Os02g43000OsAffx.12467.1.S1_at10/112+25879153..25880901receptor-like protein kinase, putative, expressed
LOC_Os02g43010Os.15696.1.S1_a_at11/112+25884576..25895049Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os02g43020Os.13461.1.S1_at11/112+25889630..25894023stress-inducible protein, putative, expressed
LOC_Os02g43030Os.5182.1.S1_at10/112+25904073..25905040Integral membrane protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12467.1.S1_at--515--4711Chr02:25879720..25879744 (25 bp)
GCGGCCGGGTACAAGCTGAGCACCT
LOC_Os02g43000
OsAffx.12467.1.S1_at--627--7031Chr02:25879728..25879752 (25 bp)
GTACAAGCTGAGCACCTCCGGCACG
LOC_Os02g43000
OsAffx.12467.1.S1_at--150--9091Chr02:25879882..25879906 (25 bp)
TGCTACGTCAGATACTGGGCAAATG
LOC_Os02g43000
OsAffx.12467.1.S1_at--950--5111Chr02:25879900..25879924 (25 bp)
GCAAATGGTTACTACTTCCGCCCTA
LOC_Os02g43000
OsAffx.12467.1.S1_at--129--10651NONE
TTCCGCCCTAATTCAGATAACTCTG
NONE
OsAffx.12467.1.S1_at--941--3411Chr02:25880523..25880547 (25 bp)
CAGATAACTCTGGAGACGATGTTGG
LOC_Os02g43000
OsAffx.12467.1.S1_at--905--8631Chr02:25880545..25880569 (25 bp)
TGGGAGGACTGTGGCGATAATAATC
LOC_Os02g43000
OsAffx.12467.1.S1_at--62--9731Chr02:25880565..25880589 (25 bp)
TAATCGGTATCTTGGCTGGACTGGC
LOC_Os02g43000
OsAffx.12467.1.S1_at--726--8111Chr02:25880582..25880606 (25 bp)
GGACTGGCACTCCTCGTGGTGTTTA
LOC_Os02g43000
OsAffx.12467.1.S1_at--265--3331Chr02:25880589..25880613 (25 bp)
CACTCCTCGTGGTGTTTATTTCTTT
LOC_Os02g43000
OsAffx.12467.1.S1_at--176--3491Chr02:25880617..25880871 (25 bp)
CAGGAAAGCATTCGGTCTGCAGTCT
LOC_Os02g43000
Target Sequence 
GCGGCCGGGTACAAGCTGAGCACCTCCGGCACGGTGCAGGGGGTGGCGCAGTGCCTCGGCGACGTCCCGGCGAACGACTG
CACCGCCTGCCTGGCCGAGGCAGTGGGGCAGCTCAAGGGCGCGTGCGGCACGGCGCTCGCCGCCGACGTCTACCTGGCGC
AGTGCTACGTCAGATACTGGGCAAATGGTTACTACTTCCGCCCTAATTCAGATAACTCTGGAGACGATGTTGGGAGGACT
GTGGCGATAATAATCGGTATCTTGGCTGGACTGGCACTCCTCGTGGTGTTTATTTCTTTCCTCAGGAAAGCATTCGGTCT
GCAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis